RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 EIF4HQ15056 248 aaKnown RBP24.8■■□□□ 1.56
SHMT1-206ENST00000579558 ELF2Q15723 593 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 MPP7Q5T2T1 576 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 SLC26A9Q7LBE3 791 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 APTXQ7Z2E3 356 aaKnown RBP24.8■■□□□ 1.56
SHMT1-206ENST00000579558 ZDHHC17Q8IUH5 632 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 HJURPQ8NCD3 748 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-206ENST00000579558 OLIG1Q8TAK6 271 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 ERLEC1Q96DZ1 483 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 PRICKLE1Q96MT3 831 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-206ENST00000579558 NUCKS1Q9H1E3 243 aaKnown RBP24.8■■□□□ 1.56
SHMT1-206ENST00000579558 DUSP15Q9H1R2 295 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-206ENST00000579558 DDIT4Q9NX09 232 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 STIM2Q9P246 746 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 THAP10Q9P2Z0 257 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-206ENST00000579558 RAD54BQ9Y620 910 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 STON1Q9Y6Q2 735 aa24.8■■□□□ 1.56
SHMT1-206ENST00000579558 SYNJ2BP-COX16A0A087WUM0 186 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 FAM170AA1A519 330 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 TYW5A2RUC4 315 aaKnown RBP24.79■■□□□ 1.56
SHMT1-206ENST00000579558 SMTNL1A8MU46 457 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 NPC1O15118 1278 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 ZBTB24O43167 697 aaPredicted RBP24.79■■□□□ 1.56
SHMT1-206ENST00000579558 LRP3O75074 770 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 RHOBTB1O94844 696 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 GABRG2P18507 467 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 TGM1P22735 817 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 HLA-FP30511 346 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 STAT1P42224 750 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 E2F5Q15329 346 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 KIAA1211LQ6NV74 962 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 C11orf74Q86VG3 221 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 ERICH1Q86X53 443 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 ZNF677Q86XU0 584 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 ZNF397Q8NF99 534 aaPredicted RBP24.79■■□□□ 1.56
SHMT1-206ENST00000579558 WFIKKN2Q8TEU8 576 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 C18orf8Q96DM3 657 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 BTN2A3PQ96KV6 586 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 ERGIC2Q96RQ1 377 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 ABCB8Q9NUT2 735 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 COX16Q9P0S2 106 aa24.79■■□□□ 1.56
SHMT1-206ENST00000579558 XPO7Q9UIA9 1087 aaKnown RBP24.79■■□□□ 1.56
SHMT1-206ENST00000579558 NOCTQ9UK39 431 aaKnown RBP24.79■■□□□ 1.56
SHMT1-206ENST00000579558 RALGAPA1Q6GYQ0 2036 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 WASH3PC4AMC7 463 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 TIMM44O43615 452 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 EPN2O95208 641 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 GABRB2P47870 512 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 ARID5AQ03989 594 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 EIF4EBP2Q13542 120 aaPredicted RBP24.78■■□□□ 1.56
SHMT1-206ENST00000579558 KLHL40Q2TBA0 621 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 MS4A13Q5J8X5 152 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 TMEM215Q68D42 235 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 DHX40Q8IX18 779 aaKnown RBP24.78■■□□□ 1.56
SHMT1-206ENST00000579558 ATP6V0D2Q8N8Y2 350 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 MSANTD4Q8NCY6 345 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 SLC20A1Q8WUM9 679 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 RLN3Q8WXF3 142 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 SORCS1Q8WY21 1168 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 RNF34Q969K3 372 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 SPACA7Q96KW9 195 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 SLTMQ9NWH9 1034 aaKnown RBP eCLIP24.78■■□□□ 1.56
SHMT1-206ENST00000579558 SLC12A6Q9UHW9 1150 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 GGA2Q9UJY4 613 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 SDK1Q7Z5N4 2213 aa24.78■■□□□ 1.56
SHMT1-206ENST00000579558 SLC2A3P11169 496 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 PABPC1P11940 636 aaKnown RBP24.77■■□□□ 1.56
SHMT1-206ENST00000579558 BCKDHBP21953 392 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 NOS2P35228 1153 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 P2RY2P41231 377 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 IL12RB1P42701 662 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 ZNF165P49910 485 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 RPS24P62847 133 aaKnown RBP24.77■■□□□ 1.56
SHMT1-206ENST00000579558 NOMO3P69849 1222 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 ZNF234Q14588 700 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 NAA35Q5VZE5 725 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 RAP1GAP2Q684P5 730 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 RNF43Q68DV7 783 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 CHST9Q7L1S5 443 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 CHSY1Q86X52 802 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 MFN1Q8IWA4 741 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 DDX51Q8N8A6 666 aaKnown RBP eCLIP24.77■■□□□ 1.56
SHMT1-206ENST00000579558 ZNF557Q8N988 423 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-206ENST00000579558 WFDC5Q8TCV5 224 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 CPA5Q8WXQ8 436 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 MYEOVQ96EZ4 313 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 ARRDC1-AS1Q9H2J1 176 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 CD248Q9HCU0 757 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 SEMA4GQ9NTN9 838 aa24.77■■□□□ 1.56
SHMT1-206ENST00000579558 ABCB4P21439 1286 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 TACR2P21452 398 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 CCR1P32246 355 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 RNASE9P60153 205 aaKnown RBP24.76■■□□□ 1.55
SHMT1-206ENST00000579558 CDR2Q01850 454 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 NME3Q13232 169 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 BYSLQ13895 437 aaKnown RBP24.76■■□□□ 1.55
SHMT1-206ENST00000579558 STARD3Q14849 445 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 FAM102AQ5T9C2 384 aaPredicted RBP24.76■■□□□ 1.55
SHMT1-206ENST00000579558 XYLT1Q86Y38 959 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 LGI2Q8N0V4 545 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms