RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PDE1CQ14123 709 aaPredicted RBP11.07□□□□□ -0.64
CCDC40-207ENST00000572253 CNPY1Q3B7I2 92 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 RALGPS1Q5JS13 557 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 ZNF534Q76KX8 674 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 PLPPR4Q7Z2D5 763 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 ZDHHC17Q8IUH5 632 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 HTR3CQ8WXA8 447 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 PIWIL1Q96J94 861 aaKnown RBP11.07□□□□□ -0.64
CCDC40-207ENST00000572253 SPATA13Q96N96 652 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 PNPOQ9NVS9 261 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 AP4E1Q9UPM8 1137 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 KPNA7A9QM74 516 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 GPR25O00155 361 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 HBP1O60381 514 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 ITGBL1O95965 494 aaPredicted RBP11.07□□□□□ -0.64
CCDC40-207ENST00000572253 TOP3BO95985 862 aaKnown RBP11.07□□□□□ -0.64
CCDC40-207ENST00000572253 CPA3P15088 417 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 CLCN3P51790 818 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 MBTD1Q05BQ5 628 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 LY6KQ17RY6 165 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 MAP1SQ66K74 1059 aaPredicted RBP11.07□□□□□ -0.64
CCDC40-207ENST00000572253 C10orf107Q8IVU9 208 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 MICALL2Q8IY33 904 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 MMP19Q99542 508 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 SHCBP1LQ9BZQ2 653 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 SSX2IPQ9Y2D8 614 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 SSC5DA1L4H1 1573 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 LOC100653049A0A140TA62 436 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 RNASEH1O60930 286 aaKnown RBP11.06□□□□□ -0.64
CCDC40-207ENST00000572253 KRT34O76011 436 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 ITGA2BP08514 1039 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 RAG1P15918 1043 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 L1CAMP32004 1257 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 GP5P40197 560 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 SLC26A2P50443 739 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 DPYSL2Q16555 572 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 CCDC153Q494R4 210 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 OLFML1Q6UWY5 402 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 SAMD7Q7Z3H4 446 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 DNAI2Q9GZS0 605 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 DPP3Q9NY33 737 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 COL4A5P29400 1685 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 ALDH1A2O94788 518 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 EGFRP00533 1210 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 ACAT1P24752 427 aaKnown RBP11.06□□□□□ -0.64
CCDC40-207ENST00000572253 GRIA1P42261 906 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 TUBB3Q13509 450 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 LPCAT4Q643R3 524 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 LRRC8BQ6P9F7 803 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 FBXW8Q8N3Y1 598 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 COLGALT1Q8NBJ5 622 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 SMARCAD1Q9H4L7 1026 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 COPG2Q9UBF2 871 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 MID2Q9UJV3 735 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 DTNAQ9Y4J8 743 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 SMIM31A0A1B0GVY4 71 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 ALDOAP04075 364 aaKnown RBP11.06□□□□□ -0.64
CCDC40-207ENST00000572253 POLBP06746 335 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 GJB1P08034 283 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 VCLP18206 1134 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 MGAT1P26572 445 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 ITGA9Q13797 1035 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 PCLAFQ15004 111 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 SCUBE3Q8IX30 993 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 TRAPPC12Q8WVT3 735 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 SPATA33Q96N06 139 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 BTBD9Q96Q07 612 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 GPR20Q99678 358 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 EMCNQ9ULC0 261 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 POMPQ9Y244 141 aa11.06□□□□□ -0.64
CCDC40-207ENST00000572253 ANKRD33BA6NCL7 494 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 F5H423 210 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 LGR5O75473 907 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 COX4I1P13073 169 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 CYP3A5P20815 502 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 PTPN9P43378 593 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 RPS6KA3P51812 740 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 HDAC4P56524 1084 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 NIPAL4Q0D2K0 466 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 IFRD2Q12894 506 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 CCNIQ14094 377 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 SFT2D3Q587I9 215 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 PMF1Q6P1K2 205 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 PGM2L1Q6PCE3 622 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 ZNF778Q96MU6 729 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 TSNARE1Q96NA8 513 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 SLC4A5Q9BY07 1137 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 ADAM28Q9UKQ2 775 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 COL11A1P12107 1806 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 CYP2C8P10632 490 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 CCDC130P13994 396 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 EDNRBP24530 442 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 PEX2P28328 305 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 SPRP35270 261 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 SERPINB8P50452 374 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 PDK3Q15120 406 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 ANKRD20A4Q4UJ75 823 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 TCHHL1Q5QJ38 904 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 GRTP1Q5TC63 336 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 CSPG4P5Q96PW8 444 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms