RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SMOQ99835 787 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.6□□□□□ -0.55
VPS53-207ENST00000570510 STRA6Q9BX79 667 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 GZF1Q9H116 711 aaPredicted RBP11.6□□□□□ -0.55
VPS53-207ENST00000570510 POLR1BQ9H9Y6 1135 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.6□□□□□ -0.55
VPS53-207ENST00000570510 FBXL12Q9NXK8 326 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.6□□□□□ -0.55
VPS53-207ENST00000570510 RASAL2Q9UJF2 1139 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 STRIP2Q9ULQ0 834 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 SCML1Q9UN30 329 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 SCML2Q9UQR0 700 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 COL5A1P20908 1838 aaPredicted RBP11.6□□□□□ -0.55
VPS53-207ENST00000570510 MAGEC1O60732 1142 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 RNASEH2AO75792 299 aaKnown RBP11.59□□□□□ -0.55
VPS53-207ENST00000570510 KIF20AO95235 890 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 FAM200BP0CF97 657 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 CCDC130P13994 396 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 ACP1P24666 158 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 LSSP48449 732 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 PSEN1P49768 467 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 MYL6P60660 151 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 ST8SIA6P61647 398 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 EFEMP1Q12805 493 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 BIRC3Q13489 604 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 SHBQ15464 509 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 ZNF699Q32M78 642 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 KMT5BQ4FZB7 885 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 ZNF667Q5HYK9 610 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 SCARA5Q6ZMJ2 495 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 USP30Q70CQ3 517 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 CHST9Q7L1S5 443 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 FUKQ8N0W3 1084 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 WFIKKN2Q8TEU8 576 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 VCPIP1Q96JH7 1222 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 PRSS16Q9NQE7 514 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 OLFML3Q9NRN5 406 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 OSER1Q9NX31 292 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 HSPBP1Q9NZL4 362 aa11.59□□□□□ -0.55
VPS53-207ENST00000570510 K7ENP7 123 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 BEST1O76090 585 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 KLKB1P03952 638 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 WNT1P04628 370 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 P4HA1P13674 534 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 SYT1P21579 422 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 ADORA2BP29275 332 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 TXLNAP40222 546 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 CASP5P51878 434 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 GALCP54803 685 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 SNRNP35Q16560 246 aaKnown RBP11.58□□□□□ -0.56
VPS53-207ENST00000570510 ZSCAN23Q3MJ62 389 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 MPPE1Q53F39 396 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 RRAGBQ5VZM2 374 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 TMEM215Q68D42 235 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 INO80CQ6PI98 192 aaPredicted RBP11.58□□□□□ -0.56
VPS53-207ENST00000570510 PAQR9Q6ZVX9 377 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 OR2T34Q8NGX1 318 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 SNRNP27Q8WVK2 155 aaKnown RBP11.58□□□□□ -0.56
VPS53-207ENST00000570510 CGRRF1Q99675 332 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 ORAI3Q9BRQ5 295 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 OSBPL2Q9H1P3 480 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 TMEM245Q9H330 911 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 PABPC3Q9H361 631 aaKnown RBP11.58□□□□□ -0.56
VPS53-207ENST00000570510 SMYD3Q9H7B4 428 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 ERVMER34-1Q9H9K5 563 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 FAM49BQ9NUQ9 324 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 PANK4Q9NVE7 773 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 EVA1BQ9NVM1 165 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 STK17AQ9UEE5 414 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 AGO1Q9UL18 857 aaKnown RBP11.58□□□□□ -0.56
VPS53-207ENST00000570510 CLEC4EQ9ULY5 219 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 PCDHA5Q9Y5H7 936 aa11.58□□□□□ -0.56
VPS53-207ENST00000570510 MYLKQ15746 1914 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 A0A1W2PP55 124 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 SIGLEC6O43699 453 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 STX6O43752 255 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 SDC3O75056 442 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 CSO75390 466 aaKnown RBP11.57□□□□□ -0.56
VPS53-207ENST00000570510 DXOO77932 396 aaKnown RBP11.57□□□□□ -0.56
VPS53-207ENST00000570510 DLDP09622 509 aaKnown RBP11.57□□□□□ -0.56
VPS53-207ENST00000570510 POLR2EP19388 210 aaKnown RBP11.57□□□□□ -0.56
VPS53-207ENST00000570510 RXRGP48443 463 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 NXPH1P58417 271 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 ZNF211Q13398 564 aaPredicted RBP11.57□□□□□ -0.56
VPS53-207ENST00000570510 SFMBT2Q5VUG0 894 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 FOXR1Q6PIV2 292 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 TMC6Q7Z403 805 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 AHI1Q8N157 1196 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 ZMIZ2Q8NF64 920 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 OR14C36Q8NHC7 312 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 DNAI2Q9GZS0 605 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 NMUR1Q9HB89 426 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 CSNK1G1Q9HCP0 422 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 ABCB8Q9NUT2 735 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 ANKMY1Q9P2S6 941 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 DACH1Q9UI36 760 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 TPX2Q9ULW0 747 aaKnown RBP11.57□□□□□ -0.56
VPS53-207ENST00000570510 NUMA1Q14980 2115 aa11.57□□□□□ -0.56
VPS53-207ENST00000570510 TBC1D3DA0A087WVF3 549 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 TBC1D3IA0A087WXS9 549 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms