RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 OTUD1Q5VV17 481 aaPredicted RBP13.53□□□□□ -0.24
CNOT1-220ENST00000569916 TMEM215Q68D42 235 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 CACNA2D4Q7Z3S7 1137 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 KBTBD6Q86V97 674 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 ZNF677Q86XU0 584 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 ZDHHC17Q8IUH5 632 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 KIAA2013Q8IYS2 634 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 CHPFQ8IZ52 775 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.53□□□□□ -0.24
CNOT1-220ENST00000569916 OLIG1Q8TAK6 271 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 WFDC5Q8TCV5 224 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 ZC3H10Q96K80 434 aaKnown RBP13.53□□□□□ -0.24
CNOT1-220ENST00000569916 PCMTD1Q96MG8 357 aaPredicted RBP13.53□□□□□ -0.24
CNOT1-220ENST00000569916 SPAG5Q96R06 1193 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 NUCKS1Q9H1E3 243 aaKnown RBP13.53□□□□□ -0.24
CNOT1-220ENST00000569916 FAM204AQ9H8W3 233 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 PARD6AQ9NPB6 346 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 CACNA2D2Q9NY47 1150 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 WDR87Q6ZQQ6 2873 aa13.53□□□□□ -0.24
CNOT1-220ENST00000569916 THADAQ6YHU6 1953 aa13.52□□□□□ -0.24
CNOT1-220ENST00000569916 EP300Q09472 2414 aaPredicted RBP13.52□□□□□ -0.24
CNOT1-220ENST00000569916 SMTNL1A8MU46 457 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 DCLK1O15075 740 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 TBL1XO60907 577 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 RETP07949 1114 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 CHRNB2P17787 502 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 GABRG2P18507 467 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 TGM1P22735 817 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 SCNN1AP37088 669 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 STAT1P42224 750 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 CDK17Q00537 523 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 FMO1Q01740 532 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 ENPP2Q13822 863 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 IQCB1Q15051 598 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 EIF4HQ15056 248 aaKnown RBP13.52□□□□□ -0.25
CNOT1-220ENST00000569916 PLK5Q496M5 336 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 MS4A13Q5J8X5 152 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 NAA35Q5VZE5 725 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 KIAA1211LQ6NV74 962 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 KIAA0907Q7Z7F0 614 aaPredicted RBP13.52□□□□□ -0.25
CNOT1-220ENST00000569916 XYLT1Q86Y38 959 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 HJURPQ8NCD3 748 aaPredicted RBP13.52□□□□□ -0.25
CNOT1-220ENST00000569916 UCMAQ8WVF2 138 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 HMGB4Q8WW32 186 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 C18orf8Q96DM3 657 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 BTN2A3PQ96KV6 586 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 DDX50Q9BQ39 737 aaKnown RBP13.52□□□□□ -0.25
CNOT1-220ENST00000569916 ADAM33Q9BZ11 813 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 DUSP15Q9H1R2 295 aaPredicted RBP13.52□□□□□ -0.25
CNOT1-220ENST00000569916 ABCB8Q9NUT2 735 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 DDIT4Q9NX09 232 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 ELOVL2Q9NXB9 296 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 CALCOCO1Q9P1Z2 691 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 BCCIPQ9P287 314 aaKnown RBP eCLIP13.52□□□□□ -0.25
CNOT1-220ENST00000569916 THAP10Q9P2Z0 257 aaPredicted RBP13.52□□□□□ -0.25
CNOT1-220ENST00000569916 INVSQ9Y283 1065 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 STON1Q9Y6Q2 735 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 NUP205Q92621 2012 aa13.52□□□□□ -0.25
CNOT1-220ENST00000569916 SYNJ2BP-COX16A0A087WUM0 186 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 KCNU1A8MYU2 1149 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 WASH3PC4AMC7 463 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 TEX33O43247 280 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 EPN2O95208 641 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 CYP1A1P04798 512 aaPredicted RBP13.51□□□□□ -0.25
CNOT1-220ENST00000569916 PABPC1P11940 636 aaKnown RBP13.51□□□□□ -0.25
CNOT1-220ENST00000569916 BCKDHBP21953 392 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 NOS2P35228 1153 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 P2RY2P41231 377 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 MATKP42679 507 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 IL12RB1P42701 662 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 RPS24P62847 133 aaKnown RBP13.51□□□□□ -0.25
CNOT1-220ENST00000569916 ZNF234Q14588 700 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 USP39Q53GS9 565 aaKnown RBP13.51□□□□□ -0.25
CNOT1-220ENST00000569916 C2CD6Q53TS8 623 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 FAM102AQ5T9C2 384 aaPredicted RBP13.51□□□□□ -0.25
CNOT1-220ENST00000569916 RAP1GAP2Q684P5 730 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 SDE2Q6IQ49 451 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 CHSY1Q86X52 802 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 ERICH1Q86X53 443 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 WFIKKN2Q8TEU8 576 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 CPA5Q8WXQ8 436 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 SORCS1Q8WY21 1168 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 ERLEC1Q96DZ1 483 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 LOXL4Q96JB6 756 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 LMLNQ96KR4 655 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 NPY6RQ99463 290 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 CIPCQ9C0C6 399 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 RTN4Q9NQC3 1192 aaKnown RBP13.51□□□□□ -0.25
CNOT1-220ENST00000569916 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.51□□□□□ -0.25
CNOT1-220ENST00000569916 COX16Q9P0S2 106 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 GGA2Q9UJY4 613 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 RAD54BQ9Y620 910 aa13.51□□□□□ -0.25
CNOT1-220ENST00000569916 TYW5A2RUC4 315 aaKnown RBP13.5□□□□□ -0.25
CNOT1-220ENST00000569916 NPC1O15118 1278 aa13.5□□□□□ -0.25
CNOT1-220ENST00000569916 LRP3O75074 770 aa13.5□□□□□ -0.25
CNOT1-220ENST00000569916 SLC2A3P11169 496 aa13.5□□□□□ -0.25
CNOT1-220ENST00000569916 NDUFV2P19404 249 aa13.5□□□□□ -0.25
CNOT1-220ENST00000569916 TFE3P19532 575 aaPredicted RBP13.5□□□□□ -0.25
CNOT1-220ENST00000569916 PTMSP20962 102 aa13.5□□□□□ -0.25
CNOT1-220ENST00000569916 TACR2P21452 398 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms