RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 ZBTB6Q15916 424 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 FXNQ16595 210 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 PREPLQ4J6C6 727 aaPredicted RBP9.03□□□□□ -0.96
LINC00558-201ENST00000569422 PID1Q7Z2X4 250 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 UBE2Q1Q7Z7E8 422 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 CLNKQ7Z7G1 428 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 NUDCD3Q8IVD9 361 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 HACE1Q8IYU2 909 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 ZNF276Q8N554 614 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 TTC39CQ8N584 583 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 LRRC52Q8N7C0 313 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 ALKBH8Q96BT7 664 aaKnown RBP9.03□□□□□ -0.96
LINC00558-201ENST00000569422 PGBD4Q96DM1 585 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 RHOBTB2Q9BYZ6 727 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 PPCSQ9HAB8 311 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 ARL8BQ9NVJ2 186 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 UBP1Q9NZI7 540 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 KANSL3Q9P2N6 904 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 ITM2BQ9Y287 266 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 NRCAMQ92823 1304 aa9.03□□□□□ -0.96
LINC00558-201ENST00000569422 ENTPD5O75356 428 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 CELF2O95319 508 aaKnown RBP9.02□□□□□ -0.96
LINC00558-201ENST00000569422 PSMB4P28070 264 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 MLH1P40692 756 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 NUMBP49757 651 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 TKTL1P51854 596 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 DPYSL2Q16555 572 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 LGSNQ5TDP6 509 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 IQSEC1Q6DN90 963 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 SLC26A9Q7LBE3 791 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 TTC8Q8TAM2 541 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 TEKT4Q8WW24 435 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 SIGLEC10Q96LC7 697 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 RILPQ96NA2 401 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 RAB3IPQ96QF0 476 aaPredicted RBP9.02□□□□□ -0.96
LINC00558-201ENST00000569422 VPS11Q9H270 941 aa9.02□□□□□ -0.96
LINC00558-201ENST00000569422 SIP14410 1827 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 CASTOR2A6NHX0 329 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 FAM72CH0Y354 149 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 RNF103O00237 685 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 DPYSL4O14531 572 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 KRT38O76015 456 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 HAUS5O94927 633 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 CD4P01730 458 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 FOSL1P15407 271 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 CD53P19397 219 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 DEUP1Q05D60 604 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 BST1Q10588 318 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 GRB14Q14449 540 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 FAM72AQ5TYM5 149 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 FAM72DQ6L9T8 149 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 ZNF534Q76KX8 674 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 UNC93AQ86WB7 457 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 FAM72BQ86X60 149 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 EMID1Q96A84 441 aaPredicted RBP9.02□□□□□ -0.97
LINC00558-201ENST00000569422 SLC7A6OSQ96CW6 309 aaPredicted RBP9.02□□□□□ -0.97
LINC00558-201ENST00000569422 P2RY11Q96G91 374 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 FAXDC2Q96IV6 333 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 EBNA1BP2Q99848 306 aaKnown RBP9.02□□□□□ -0.97
LINC00558-201ENST00000569422 PRDM12Q9H4Q4 367 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 ARHGEF4Q9NR80 690 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 KRT82Q9NSB4 513 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 CNTN3Q9P232 1028 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 NKX1-2Q9UD57 310 aaPredicted RBP9.02□□□□□ -0.97
LINC00558-201ENST00000569422 GOLGA8TH3BQL2 631 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 PIRO00625 290 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 NRP1O14786 923 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 USP17L7P0C7H9 530 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 ERVK-10P10266 1014 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 NCAM1P13591 858 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 CCNB1P14635 433 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 ZNF16P17020 682 aaPredicted RBP9.02□□□□□ -0.97
LINC00558-201ENST00000569422 SAT1P21673 171 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 MATKP42679 507 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 ETV4P43268 484 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 PSEN2P49810 448 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 NEK3P51956 506 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 SLC18A1P54219 525 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 MRPS5P82675 430 aaKnown RBP9.02□□□□□ -0.97
LINC00558-201ENST00000569422 PDE1BQ01064 536 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 LMNTD2Q8IXW0 634 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 FAM13CQ8NE31 585 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 GSDMBQ8TAX9 411 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 RNF139Q8WU17 664 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 TNIP3Q96KP6 325 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 ZNF560Q96MR9 790 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 GAD1Q99259 594 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 ULBP1Q9BZM6 244 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 PIGVQ9NUD9 493 aa9.02□□□□□ -0.97
LINC00558-201ENST00000569422 DDX43Q9NXZ2 648 aaKnown RBP9.02□□□□□ -0.97
LINC00558-201ENST00000569422 KLHL8Q9P2G9 620 aaPredicted RBP9.02□□□□□ -0.97
LINC00558-201ENST00000569422 PPARGC1AQ9UBK2 798 aaKnown RBP9.02□□□□□ -0.97
LINC00558-201ENST00000569422 OTOFQ9HC10 1997 aa9.01□□□□□ -0.97
LINC00558-201ENST00000569422 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.01□□□□□ -0.97
LINC00558-201ENST00000569422 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.01□□□□□ -0.97
LINC00558-201ENST00000569422 C2CD2LO14523 706 aa9.01□□□□□ -0.97
LINC00558-201ENST00000569422 ATP9BO43861 1147 aa9.01□□□□□ -0.97
LINC00558-201ENST00000569422 RFPL1O75677 317 aa9.01□□□□□ -0.97
LINC00558-201ENST00000569422 STAU1O95793 577 aaKnown RBP9.01□□□□□ -0.97
LINC00558-201ENST00000569422 C6orf222P0C671 652 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms