RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 CWH43Q9H720 699 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 VPS37BQ9H9H4 285 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 TMBIM4Q9HC24 238 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 NINJ2Q9NZG7 142 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 PAK5Q9P286 719 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 BCLAF3A2AJT9 711 aaKnown RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 WDR27A2RRH5 827 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 ZNF487B1APH4 448 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 E7EVH7 732 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 NDC80O14777 642 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 IRAK2O43187 625 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 NUDT17P0C025 328 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 MAGEA11P43364 429 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 AIF1P55008 147 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 WDR5P61964 334 aaKnown RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 GABPB1Q06547 395 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 PKN2Q16513 984 aaKnown RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 BBS9Q3SYG4 887 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 ARHGEF18Q6ZSZ5 1173 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 CCDC13Q8IYE1 715 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 DNAJC5GQ8N7S2 189 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 HTR3CQ8WXA8 447 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 VWCEQ96DN2 955 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 CELF6Q96J87 481 aaKnown RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 ZNF558Q96NG5 402 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 FERMT1Q9BQL6 677 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 KLC2Q9H0B6 622 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 SHOC2Q9UQ13 582 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 SCML2Q9UQR0 700 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 MYO7AQ13402 2215 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 SHROOM3Q8TF72 1996 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 HMGB1P1B2RPK0 211 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 KCNK1O00180 336 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 RASGRF2O14827 1237 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 RGS16O15492 202 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 TMEM63AO94886 807 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 HAPLN1P10915 354 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 RFC2P35250 354 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 ARL4CP56559 192 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 SCAPQ12770 1279 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 TAF12Q16514 161 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 C10orf120Q5SQS8 335 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 PDZD4Q76G19 769 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 PDIK1LQ8N165 341 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 VPS52Q8N1B4 723 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 SCML4Q8N228 414 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 NAT8LQ8N9F0 302 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 DEPDC1BQ8WUY9 529 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 AUTS2Q8WXX7 1259 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 SPOCK2Q92563 424 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 SERPINB11Q96P15 392 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 NACA2Q9H009 215 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 PRDM12Q9H4Q4 367 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 ETNK1Q9HBU6 452 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 PRKAG2Q9UGJ0 569 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 TBK1Q9UHD2 729 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 FARP1Q9Y4F1 1045 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 CDH23Q9H251 3354 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 PPP1R12AO14974 1030 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 PAGE1O75459 146 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 RTN3O95197 1032 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 NR1D1P20393 614 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 MAGOHP61326 146 aaKnown RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 RPL10AP62906 217 aaKnown RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 XRCC4Q13426 336 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 DPYSQ14117 519 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 PDK1Q15118 436 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 FNBP1LQ5T0N5 605 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 MFSD5Q6N075 450 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 CEP128Q6ZU80 1094 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 ARHGAP18Q8N392 663 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.29□□□□□ -1.24
SMG1-215ENST00000568239 PYROXD1Q8WU10 500 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 P2RY11Q96G91 374 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 FCRL2Q96LA5 508 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 ZNF512Q96ME7 567 aaPredicted RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 ZBED2Q9BTP6 218 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 VN1R3Q9BXE9 311 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 SMOC2Q9H3U7 446 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 CYP4F11Q9HBI6 524 aa7.29□□□□□ -1.24
SMG1-215ENST00000568239 TLR8Q9NR97 1041 aaKnown RBP7.29□□□□□ -1.24
SMG1-215ENST00000568239 DFFAO00273 331 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 DCLK1O15075 740 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 AVILO75366 819 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 STK10O94804 968 aaKnown RBP7.28□□□□□ -1.24
SMG1-215ENST00000568239 VNN2O95498 520 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 METTL18O95568 372 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 HSPA1AP0DMV8 641 aaKnown RBP7.28□□□□□ -1.24
SMG1-215ENST00000568239 HSPA1BP0DMV9 641 aaKnown RBP7.28□□□□□ -1.24
SMG1-215ENST00000568239 VAV1P15498 845 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 CAPN2P17655 700 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 TBX4P57082 545 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 SMARCB1Q12824 385 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 MSS51Q4VC12 460 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 RASIP1Q5U651 963 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 FAM43BQ6ZT52 329 aaPredicted RBP7.28□□□□□ -1.24
SMG1-215ENST00000568239 PALM2Q8IXS6 379 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 NPWQ8N729 165 aa7.28□□□□□ -1.24
SMG1-215ENST00000568239 QKIQ96PU8 341 aaKnown RBP eCLIP7.28□□□□□ -1.24
SMG1-215ENST00000568239 CCDC77Q9BR77 488 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms