RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ITGA9Q13797 1035 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 PDPK2PQ6A1A2 396 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 HEATR6Q6AI08 1181 aaKnown RBP13.6□□□□□ -0.23
CLN3-210ENST00000563874 PACS1Q6VY07 963 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 FRMD7Q6ZUT3 714 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 CMC1Q7Z7K0 106 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 TTC30AQ86WT1 665 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 PYROXD2Q8N2H3 581 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 COPS5Q92905 334 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 MOCOSQ96EN8 888 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 SORT1Q99523 831 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 SPATA16Q9BXB7 569 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 RNF19AQ9NV58 838 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 E9PBE3 544 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 KLHL41O60662 606 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 PGK2P07205 417 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 ABCG1P45844 678 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 CDK7P50613 346 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 SLC10A6Q3KNW5 377 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 LIN52Q52LA3 116 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 LCLAT1Q6UWP7 414 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 PPP4R1Q8TF05 950 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 APBB2Q92870 758 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 PGBD4Q96DM1 585 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 PPP1R36Q96LQ0 422 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 FAM192AQ9GZU8 254 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 PAPSS1O43252 624 aaPredicted RBP13.59□□□□□ -0.23
CLN3-210ENST00000563874 HCRTO43612 131 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 GCATO75600 419 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 GABBR2O75899 941 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 ERVK-10P10266 1014 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 RAG1P15918 1043 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 MLH1P40692 756 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 GMPSP49915 693 aaPredicted RBP13.59□□□□□ -0.23
CLN3-210ENST00000563874 MED21Q13503 144 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 STILQ15468 1287 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 TREML2Q5T2D2 321 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 FAM167AQ96KS9 214 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 C12orf42Q96LP6 360 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 GPR20Q99678 358 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 ZNF670Q9BS34 389 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 NT5C1AQ9BXI3 368 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 IFT122Q9HBG6 1241 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 SEPT10Q9P0V9 454 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 DNAJB4Q9UDY4 337 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 MAGED2Q9UNF1 606 aaPredicted RBP13.59□□□□□ -0.23
CLN3-210ENST00000563874 POMPQ9Y244 141 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 TNFSF13BQ9Y275 285 aa13.59□□□□□ -0.23
CLN3-210ENST00000563874 IGKV6-21A0A0C4DH24 114 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 A6NJR5 290 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 KLHL2O95198 593 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 SERPINE1P05121 402 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 PRKCGP05129 697 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 P4HA1P13674 534 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 VAV1P15498 845 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 L1CAMP32004 1257 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 GRIA2P42262 883 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 GRAMD1BQ3KR37 738 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 C1QTNF12Q5T7M4 302 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 C7orf31Q8N865 590 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 TFB1MQ8WVM0 346 aaKnown RBP13.58□□□□□ -0.23
CLN3-210ENST00000563874 ATP2A3Q93084 1043 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 CXCL16Q9H2A7 254 aa13.58□□□□□ -0.23
CLN3-210ENST00000563874 G3BP2Q9UN86 482 aaKnown RBP13.58□□□□□ -0.23
CLN3-210ENST00000563874 LCTP09848 1927 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 C19orf81C9J6K1 198 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 GLRA3O75311 464 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 ITGA2BP08514 1039 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 TPSB2P20231 275 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 ITGAXP20702 1163 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 TYK2P29597 1187 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 SLC6A3Q01959 620 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 CDK18Q07002 472 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 TMEM132DQ14C87 1099 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 TPSAB1Q15661 275 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 AMHR2Q16671 573 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 MMEL1Q495T6 779 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 ACAD11Q709F0 780 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 CCDC185Q8N715 623 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 KLHL4Q9C0H6 718 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 DTLQ9NZJ0 730 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 A0A087WZ62 844 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 CCNT2O60583 730 aaKnown RBP13.58□□□□□ -0.24
CLN3-210ENST00000563874 GOT1P17174 413 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 VCLP18206 1134 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 PHKA2P46019 1235 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 TBL3Q12788 808 aaKnown RBP13.58□□□□□ -0.24
CLN3-210ENST00000563874 AAGABQ6PD74 315 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 TIFABQ6ZNK6 161 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 HACE1Q8IYU2 909 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 ST13P4Q8IZP2 240 aaPredicted RBP13.58□□□□□ -0.24
CLN3-210ENST00000563874 CHST13Q8NET6 341 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 SPATA33Q96N06 139 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 MRPL45Q9BRJ2 306 aaKnown RBP13.58□□□□□ -0.24
CLN3-210ENST00000563874 FDXACB1Q9BRP7 624 aaPredicted RBP13.58□□□□□ -0.24
CLN3-210ENST00000563874 CYP3A43Q9HB55 503 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 HESX1Q9UBX0 185 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 AP4E1Q9UPM8 1137 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 SORCS3Q9UPU3 1222 aa13.58□□□□□ -0.24
CLN3-210ENST00000563874 TRIP11Q15643 1979 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms