RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MKRN2Q9H000 416 aaKnown RBP19.83■□□□□ 0.77
VPS35-202ENST00000561713 PRDM16Q9HAZ2 1276 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 IL21RQ9HBE5 538 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 WSB2Q9NYS7 404 aaPredicted RBP19.83■□□□□ 0.77
VPS35-202ENST00000561713 FBXO10Q9UK96 956 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 ZNF510Q9Y2H8 683 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 MEI4A8MW99 385 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 KCNJ18B7U540 433 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 PPP1R3GB7ZBB8 358 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 CBFA2T3O75081 653 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 GABBR2O75899 941 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 SETSIPP0DME0 302 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 NCAM1P13591 858 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 SGSHP51688 502 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 DAOAP59103 153 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 PKDCCQ504Y2 493 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 BSPRYQ5W0U4 402 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 RRAGAQ7L523 313 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 ANKS1BQ7Z6G8 1248 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 ZCCHC9Q8N567 271 aaKnown RBP19.82■□□□□ 0.76
VPS35-202ENST00000561713 RBBP8NLQ8NC74 664 aaPredicted RBP19.82■□□□□ 0.76
VPS35-202ENST00000561713 DDI1Q8WTU0 396 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 DNASE2BQ8WZ79 361 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 ZDHHC5Q9C0B5 715 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 CIPCQ9C0C6 399 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 MIR1-1HGQ9H1L0 117 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 METTL14Q9HCE5 456 aaKnown RBP19.82■□□□□ 0.76
VPS35-202ENST00000561713 USP36Q9P275 1121 aaKnown RBP19.82■□□□□ 0.76
VPS35-202ENST00000561713 PCOLCE2Q9UKZ9 415 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 SLC27A6Q9Y2P4 619 aa19.82■□□□□ 0.76
VPS35-202ENST00000561713 PLXNB3Q9ULL4 1909 aa19.81■□□□□ 0.76
VPS35-202ENST00000561713 A0A1B0GTW7 788 aa19.81■□□□□ 0.76
VPS35-202ENST00000561713 PRKCHP24723 683 aa19.81■□□□□ 0.76
VPS35-202ENST00000561713 HOXD9P28356 352 aaPredicted RBP19.81■□□□□ 0.76
VPS35-202ENST00000561713 CHKAP35790 457 aa19.81■□□□□ 0.76
VPS35-202ENST00000561713 STARD3Q14849 445 aa19.81■□□□□ 0.76
VPS35-202ENST00000561713 TRIP4Q15650 581 aaPredicted RBP19.81■□□□□ 0.76
VPS35-202ENST00000561713 PMF1Q6P1K2 205 aa19.81■□□□□ 0.76
VPS35-202ENST00000561713 METTL3Q86U44 580 aaKnown RBP19.81■□□□□ 0.76
VPS35-202ENST00000561713 LMO3Q8TAP4 145 aa19.81■□□□□ 0.76
VPS35-202ENST00000561713 RNF139Q8WU17 664 aa19.81■□□□□ 0.76
VPS35-202ENST00000561713 PIWIL1Q96J94 861 aaKnown RBP19.81■□□□□ 0.76
VPS35-202ENST00000561713 CCDC86Q9H6F5 360 aaKnown RBP19.81■□□□□ 0.76
VPS35-202ENST00000561713 ITM2CQ9NQX7 267 aa19.81■□□□□ 0.76
VPS35-202ENST00000561713 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.81■□□□□ 0.76
VPS35-202ENST00000561713 CYBBP04839 570 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 TPMTP51580 245 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 MORC3Q14149 939 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 ZNF234Q14588 700 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 COL28A1Q2UY09 1125 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 DCAF12L1Q5VU92 463 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 TMEM215Q68D42 235 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 LCLAT1Q6UWP7 414 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 FAM217AQ8IXS0 508 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 CPXM2Q8N436 756 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 MDM1Q8TC05 714 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 SETD7Q8WTS6 366 aaKnown RBP19.8■□□□□ 0.76
VPS35-202ENST00000561713 OLA1Q9NTK5 396 aaKnown RBP19.8■□□□□ 0.76
VPS35-202ENST00000561713 THAP10Q9P2Z0 257 aaPredicted RBP19.8■□□□□ 0.76
VPS35-202ENST00000561713 APOBEC2Q9Y235 224 aaKnown RBP19.8■□□□□ 0.76
VPS35-202ENST00000561713 NFE2L3Q9Y4A8 694 aa19.8■□□□□ 0.76
VPS35-202ENST00000561713 TMEM131Q92545 1883 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 PAEPP09466 180 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 HLA-EP13747 358 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 BNC1Q01954 994 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 GLRX5Q86SX6 157 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 PDZD3Q86UT5 571 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 TMPRSS6Q8IU80 811 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 ZNF366Q8N895 744 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 CADM4Q8NFZ8 388 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 KCTD13Q8WZ19 329 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 KREMEN1Q96MU8 473 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 GAREM1Q9H706 876 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 CNGB3Q9NQW8 809 aa19.79■□□□□ 0.76
VPS35-202ENST00000561713 BPTFQ12830 3046 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 GCN1Q92616 2671 aaKnown RBP19.78■□□□□ 0.76
VPS35-202ENST00000561713 HARS2P49590 506 aaKnown RBP19.78■□□□□ 0.76
VPS35-202ENST00000561713 ZNF132P52740 706 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 PAK1Q13153 545 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 ENPP2Q13822 863 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 SOWAHCQ53LP3 525 aaPredicted RBP19.78■□□□□ 0.76
VPS35-202ENST00000561713 RFWD3Q6PCD5 774 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 TRIM59Q8IWR1 403 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 WFDC5Q8TCV5 224 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 CYB5D2Q8WUJ1 264 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 SIPA1Q96FS4 1042 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 GTPBP4Q9BZE4 634 aaKnown RBP19.78■□□□□ 0.76
VPS35-202ENST00000561713 MIS12Q9H081 205 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 INTS2Q9H0H0 1204 aaKnown RBP19.78■□□□□ 0.76
VPS35-202ENST00000561713 ELOVL2Q9NXB9 296 aa19.78■□□□□ 0.76
VPS35-202ENST00000561713 FNDC3AQ9Y2H6 1198 aaKnown RBP19.78■□□□□ 0.76
VPS35-202ENST00000561713 HBS1LQ9Y450 684 aaKnown RBP19.78■□□□□ 0.76
VPS35-202ENST00000561713 GOLGA6L7A0A1B0GV03 622 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 METTL12A8MUP2 240 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 BCAT2O15382 392 aaPredicted RBP19.77■□□□□ 0.76
VPS35-202ENST00000561713 SYNCRIPO60506 623 aaKnown RBP19.77■□□□□ 0.76
VPS35-202ENST00000561713 HLA-FP30511 346 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 COPAP53621 1224 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 KCNH2Q12809 1159 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 HLA-BQ31612 363 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms