RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CLEC4CQ8WTT0 213 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 RNF139Q8WU17 664 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 KCTD13Q8WZ19 329 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 PRCCQ92733 491 aaPredicted RBP12.14□□□□□ -0.47
USP3-220ENST00000561381 GATA6Q92908 595 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 FOXJ1Q92949 421 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 SIPA1Q96FS4 1042 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 SLC2A11Q9BYW1 496 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 OLA1Q9NTK5 396 aaKnown RBP12.14□□□□□ -0.47
USP3-220ENST00000561381 KLK13Q9UKR3 277 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 ZMIZ1Q9ULJ6 1067 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 HBS1LQ9Y450 684 aaKnown RBP12.14□□□□□ -0.47
USP3-220ENST00000561381 PCDHB4Q9Y5E5 795 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 CEP295Q9C0D2 2601 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 GOLGA6L7A0A1B0GV03 622 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 GOLGA6L4A6NEF3 574 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 MEI4A8MW99 385 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 SH3BP5O60239 455 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 SMC2O95347 1197 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 SYPP08247 313 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 SETSIPP0DME0 302 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 TBXAS1P24557 533 aaPredicted RBP12.13□□□□□ -0.47
USP3-220ENST00000561381 BRD2P25440 801 aaKnown RBP12.13□□□□□ -0.47
USP3-220ENST00000561381 ZNF132P52740 706 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 LRRC63Q05C16 580 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 GRIK2Q13002 908 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 EIF4HQ15056 248 aaKnown RBP12.13□□□□□ -0.47
USP3-220ENST00000561381 MPPE1Q53F39 396 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 WDR45BQ5MNZ6 344 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 ADGRF1Q5T601 910 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 DCAF12L1Q5VU92 463 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 RFWD3Q6PCD5 774 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 LCLAT1Q6UWP7 414 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 SERPINA13PQ6UXR4 307 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 ADIPOR2Q86V24 386 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 FAM124AQ86V42 546 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 ZCCHC9Q8N567 271 aaKnown RBP12.13□□□□□ -0.47
USP3-220ENST00000561381 LMO3Q8TAP4 145 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 WFDC5Q8TCV5 224 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 SLC35F5Q8WV83 523 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 DNASE2BQ8WZ79 361 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 TMA16Q96EY4 203 aaKnown RBP12.13□□□□□ -0.47
USP3-220ENST00000561381 MIR1-1HGQ9H1L0 117 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 CNGB3Q9NQW8 809 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 ABCB8Q9NUT2 735 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 DNAAF2Q9NVR5 837 aaKnown RBP12.13□□□□□ -0.47
USP3-220ENST00000561381 STOML2Q9UJZ1 356 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 MAN1B1Q9UKM7 699 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 SLCO1B1Q9Y6L6 691 aa12.13□□□□□ -0.47
USP3-220ENST00000561381 METTL12A8MUP2 240 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 M0QYV0 167 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 PSMA7O14818 248 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 TIMM44O43615 452 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 IGLV3-19P01714 112 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 PAEPP09466 180 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 GNSP15586 552 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 BMP6P22004 513 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 SLC6A4P31645 630 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 ARID5AQ03989 594 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 PTPRNQ16849 979 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 FNDC3BQ53EP0 1204 aaKnown RBP12.12□□□□□ -0.47
USP3-220ENST00000561381 KLHL10Q6JEL2 608 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 TTI2Q6NXR4 508 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 MSANTD2Q6P1R3 559 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 CHST9Q7L1S5 443 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 RRAGAQ7L523 313 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 ARHGEF19Q8IW93 802 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 SCML4Q8N228 414 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 PPM1KQ8N3J5 372 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 CHCHD4Q8N4Q1 142 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 KDF1Q8NAX2 398 aaPredicted RBP12.12□□□□□ -0.47
USP3-220ENST00000561381 CADM4Q8NFZ8 388 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 OR2T3Q8NH03 318 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 MYEOVQ96EZ4 313 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 NT5C1BQ96P26 610 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 TMEM245Q9H330 911 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 IL21RQ9HBE5 538 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 METTL14Q9HCE5 456 aaKnown RBP12.12□□□□□ -0.47
USP3-220ENST00000561381 ABCC13Q9NSE7 274 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 SUSD2Q9UGT4 822 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 GGA2Q9UJY4 613 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 KIAA1257Q9ULG3 409 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.12□□□□□ -0.47
USP3-220ENST00000561381 IGF2RP11717 2491 aa12.12□□□□□ -0.47
USP3-220ENST00000561381 KNL1Q8NG31 2342 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 MUC22E2RYF6 1773 aaPredicted RBP12.11□□□□□ -0.47
USP3-220ENST00000561381 A0A1B0GTW7 788 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 TBL1XO60907 577 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 LATS1O95835 1130 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 IGLV3-27P01718 113 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 ACADMP11310 421 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 PABPC1P11940 636 aaKnown RBP12.11□□□□□ -0.47
USP3-220ENST00000561381 OXTRP30559 389 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 CD70P32970 193 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 BNC1Q01954 994 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 CAMK2GQ13555 558 aaPredicted RBP12.11□□□□□ -0.47
USP3-220ENST00000561381 CNGA2Q16280 664 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 CCDC40Q4G0X9 1142 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 FAM133BQ5BKY9 247 aaKnown RBP12.11□□□□□ -0.47
USP3-220ENST00000561381 PIK3R6Q5UE93 754 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms