RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TPRP12270 2363 aaKnown RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 THAP12O43422 761 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 LATS1O95835 1130 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 SERPINF2P08697 491 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 PABPC1P11940 636 aaKnown RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 CD70P32970 193 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 DPP6P42658 865 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 TPMTP51580 245 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 COPAP53621 1224 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 EIF4HQ15056 248 aaKnown RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 PLEKHG6Q3KR16 790 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 FAM133BQ5BKY9 247 aaKnown RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 SYCP2LQ5T4T6 812 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 PIK3R6Q5UE93 754 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 SYPL2Q5VXT5 272 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 PEAR1Q5VY43 1037 aaPredicted RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 NUGGCQ68CJ6 796 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 MBLAC2Q68D91 279 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 NADSYN1Q6IA69 706 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 METTL3Q86U44 580 aaKnown RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 FAM124AQ86V42 546 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 CFAP52Q8N1V2 620 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 CEP76Q8TAP6 659 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 WFDC5Q8TCV5 224 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 DQX1Q8TE96 717 aaKnown RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 PRCCQ92733 491 aaPredicted RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 FCRL2Q96LA5 508 aaPredicted RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 CAPN10Q9HC96 672 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 WSB2Q9NYS7 404 aaPredicted RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 USP36Q9P275 1121 aaKnown RBP10.63□□□□□ -0.71
LDLR-214ENST00000560628 CYTH4Q9UIA0 394 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 GGA2Q9UJY4 613 aa10.63□□□□□ -0.71
LDLR-214ENST00000560628 BECN2A8MW95 431 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 E5RJQ4 531 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 CAPN9O14815 690 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 PAPSS1O43252 624 aaPredicted RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 MED7O43513 233 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 TOP3BO95985 862 aaKnown RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 MOCS2O96007 188 aaPredicted RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 ACADMP11310 421 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 CEACAM1P13688 526 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 SPINK2P20155 84 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 CSRP1P21291 193 aaKnown RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 GNA15P30679 374 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 HOXD12P35452 270 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 ACADSBP45954 432 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 MTIF2P46199 727 aaKnown RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 RPL34P49207 117 aaKnown RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 ZNF445P59923 1031 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 RPS24P62847 133 aaKnown RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 RING1Q06587 406 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 ZNF252P-AS1Q0IIN9 211 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 FOXC1Q12948 553 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 E2F5Q15329 346 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 TAF5Q15542 800 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 TRIM65Q6PJ69 517 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 GBP6Q6ZN66 633 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 KIAA0907Q7Z7F0 614 aaPredicted RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 IRF2BP1Q8IU81 584 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 HDDC3Q8N4P3 179 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 OR2T3Q8NH03 318 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 WFIKKN2Q8TEU8 576 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 FOXJ1Q92949 421 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 NUP58Q9BVL2 599 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 SLC4A5Q9BY07 1137 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 NUCKS1Q9H1E3 243 aaKnown RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 MIR1-1HGQ9H1L0 117 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 TMEM245Q9H330 911 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 MTG2Q9H4K7 406 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 TJP2Q9UDY2 1190 aa10.62□□□□□ -0.71
LDLR-214ENST00000560628 XPO7Q9UIA9 1087 aaKnown RBP10.62□□□□□ -0.71
LDLR-214ENST00000560628 PI4KAP42356 2102 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 SPAARA0A1B0GVQ0 90 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 MEI4A8MW99 385 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 ARHGAP33O14559 1287 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 IRAK2O43187 625 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 SART1O43290 800 aaKnown RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 OPHN1O60890 802 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 KRT37O76014 449 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 ATP5BP06576 529 aaKnown RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 DLDP09622 509 aaKnown RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 GNSP15586 552 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 POLR2EP19388 210 aaKnown RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 PON1P27169 355 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 OXTRP30559 389 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 PITX1P78337 314 aaPredicted RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 CAMK2GQ13555 558 aaPredicted RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 PTPRNQ16849 979 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 TPD52L1Q16890 204 aaPredicted RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 EXOC3L4Q17RC7 722 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 ZC3H12AQ5D1E8 599 aaKnown RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 WDR45BQ5MNZ6 344 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 MPP7Q5T2T1 576 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 DCAF12L1Q5VU92 463 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 MMS22LQ6ZRQ5 1243 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 ENOSF1Q7L5Y1 443 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 RABEPKQ7Z6M1 372 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 TMEM110Q86TL2 294 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 TAC4Q86UU9 113 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 PASD1Q8IV76 773 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms