RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 MAMLD1Q13495 774 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 CCDC14Q49A88 953 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 PIK3R6Q5UE93 754 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 TTC39BQ5VTQ0 682 aaPredicted RBP13.48□□□□□ -0.25
NEDD8-208ENST00000560427 NADSYN1Q6IA69 706 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 GRAMD4Q6IC98 578 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 ALKBH5Q6P6C2 394 aaKnown RBP13.48□□□□□ -0.25
NEDD8-208ENST00000560427 DCUN1D2Q6PH85 259 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 C12orf40Q86WS4 652 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 EMC1Q8N766 993 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 TERB1Q8NA31 727 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 JOSD2Q8TAC2 188 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 KCNV2Q8TDN2 545 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 FNIP1Q8TF40 1166 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 DDI1Q8WTU0 396 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 CENPIQ92674 756 aaPredicted RBP13.48□□□□□ -0.25
NEDD8-208ENST00000560427 ZNF653Q96CK0 615 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 TMA16Q96EY4 203 aaKnown RBP13.48□□□□□ -0.25
NEDD8-208ENST00000560427 MCEEQ96PE7 176 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 LMAN1LQ9HAT1 526 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 ARHGEF4Q9NR80 690 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 DNAJC17Q9NVM6 304 aaKnown RBP13.48□□□□□ -0.25
NEDD8-208ENST00000560427 CNOT8Q9UFF9 292 aaKnown RBP13.48□□□□□ -0.25
NEDD8-208ENST00000560427 SLC27A6Q9Y2P4 619 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 HCN4Q9Y3Q4 1203 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 KIAA1549LQ6ZVL6 1849 aa13.48□□□□□ -0.25
NEDD8-208ENST00000560427 MIA3Q5JRA6 1907 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 SYNJ2BP-COX16A0A087WUM0 186 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 FAM170AA1A519 330 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 F5H5T6 163 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 ATG13O75143 517 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 TACR2P21452 398 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 HOXD9P28356 352 aaPredicted RBP13.47□□□□□ -0.25
NEDD8-208ENST00000560427 EIF4A3P38919 411 aaKnown RBP13.47□□□□□ -0.25
NEDD8-208ENST00000560427 TNFRSF4P43489 277 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 DGKGP49619 791 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 E2F5Q15329 346 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 ASTE1Q2TB18 679 aaPredicted RBP13.47□□□□□ -0.25
NEDD8-208ENST00000560427 ARL13BQ3SXY8 428 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 HSF5Q4G112 596 aaPredicted RBP13.47□□□□□ -0.25
NEDD8-208ENST00000560427 MS4A13Q5J8X5 152 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 RABGAP1LQ5R372 815 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.47□□□□□ -0.25
NEDD8-208ENST00000560427 CHSY1Q86X52 802 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 PHTF2Q8N3S3 785 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 SPEM1Q8N4L4 309 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 TC2NQ8N9U0 490 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 DTWD2Q8NBA8 298 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 C1orf74Q96LT6 269 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 CCDC42Q96M95 316 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 PRMT1Q99873 361 aaKnown RBP13.47□□□□□ -0.25
NEDD8-208ENST00000560427 NCAPGQ9BPX3 1015 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 CNPY3Q9BT09 278 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 COX16Q9P0S2 106 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 CALCOCO1Q9P1Z2 691 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 IMPACTQ9P2X3 320 aa13.47□□□□□ -0.25
NEDD8-208ENST00000560427 ZNF318Q5VUA4 2279 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 CHURC1-FNTBB4DL54 471 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 GALR2O43603 387 aaPredicted RBP13.46□□□□□ -0.25
NEDD8-208ENST00000560427 AKR1B10O60218 316 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 PAPSS2O95340 614 aaPredicted RBP13.46□□□□□ -0.25
NEDD8-208ENST00000560427 EGFP01133 1207 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 TFE3P19532 575 aaPredicted RBP13.46□□□□□ -0.25
NEDD8-208ENST00000560427 SLC6A4P31645 630 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 CCR3P51677 355 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 AIF1P55008 147 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 EIF4HQ15056 248 aaKnown RBP13.46□□□□□ -0.25
NEDD8-208ENST00000560427 CCDC122Q5T0U0 273 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 NAIF1Q69YI7 327 aaPredicted RBP13.46□□□□□ -0.25
NEDD8-208ENST00000560427 ANKS1BQ7Z6G8 1248 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 PHLDB2Q86SQ0 1253 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 FAM172AQ8WUF8 416 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 NTAN1Q96AB6 310 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 ACDQ96AP0 544 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 PRICKLE1Q96MT3 831 aaPredicted RBP13.46□□□□□ -0.25
NEDD8-208ENST00000560427 PANX2Q96RD6 677 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 HAPLN3Q96S86 360 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 ADAM33Q9BZ11 813 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 TKTL2Q9H0I9 626 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 IRF2BPLQ9H1B7 796 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 NHEJ1Q9H9Q4 299 aaPredicted RBP13.46□□□□□ -0.25
NEDD8-208ENST00000560427 FBRSL1Q9HCM7 1045 aaKnown RBP13.46□□□□□ -0.25
NEDD8-208ENST00000560427 LCMT1Q9UIC8 334 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 STARD13Q9Y3M8 1113 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 ARIH1Q9Y4X5 557 aaPredicted RBP13.46□□□□□ -0.25
NEDD8-208ENST00000560427 TRIOO75962 3097 aa13.46□□□□□ -0.25
NEDD8-208ENST00000560427 GOLGA6L7A0A1B0GV03 622 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 TBC1D3BA6NDS4 549 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 TMEM191CA6NGB0 347 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 GOLGA6L6A8MZA4 724 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 NPC1O15118 1278 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 RNF40O75150 1001 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 PAGE1O75459 146 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 GJB6O95452 261 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 ADCY5O95622 1261 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 CISD3P0C7P0 127 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 SLC6A11P48066 632 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 OXCT1P55809 520 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 HDAC4P56524 1084 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 RPL7AP62424 266 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms