RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 PCOLCE2Q9UKZ9 415 aa13.68□□□□□ -0.22
TPM1-220ENST00000559556 ZDHHC9Q9Y397 364 aa13.68□□□□□ -0.22
TPM1-220ENST00000559556 MATKP42679 507 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 HARS2P49590 506 aaKnown RBP13.67□□□□□ -0.22
TPM1-220ENST00000559556 ARID5AQ03989 594 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 CUL2Q13617 745 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 CBWD6Q4V339 395 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 SGO2Q562F6 1265 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 CBWD3Q5JTY5 395 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 CBWD5Q5RIA9 395 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 IL27RAQ6UWB1 636 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 KIAA0907Q7Z7F0 614 aaPredicted RBP13.67□□□□□ -0.22
TPM1-220ENST00000559556 ZC3H3Q8IXZ2 948 aaKnown RBP13.67□□□□□ -0.22
TPM1-220ENST00000559556 SMYD4Q8IYR2 804 aaPredicted RBP13.67□□□□□ -0.22
TPM1-220ENST00000559556 SCML4Q8N228 414 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.67□□□□□ -0.22
TPM1-220ENST00000559556 OR2T3Q8NH03 318 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 BAHD1Q8TBE0 780 aaPredicted RBP13.67□□□□□ -0.22
TPM1-220ENST00000559556 SCAND2PQ9GZW5 306 aaPredicted RBP13.67□□□□□ -0.22
TPM1-220ENST00000559556 MIR1-1HGQ9H1L0 117 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 TMEM245Q9H330 911 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 GAREM1Q9H706 876 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 FBRSQ9HAH7 460 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 IL21RQ9HBE5 538 aa13.67□□□□□ -0.22
TPM1-220ENST00000559556 APOBEC2Q9Y235 224 aaKnown RBP13.67□□□□□ -0.22
TPM1-220ENST00000559556 FNDC3AQ9Y2H6 1198 aaKnown RBP13.67□□□□□ -0.22
TPM1-220ENST00000559556 YJEFN3A6XGL0 299 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 E7ENQ6 273 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 TAF4O00268 1085 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 CETN3O15182 167 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 SLC16A3O15427 465 aaKnown RBP13.66□□□□□ -0.22
TPM1-220ENST00000559556 ZNF202O95125 648 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 SETSIPP0DME0 302 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 HLA-EP13747 358 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 YWHAEP62258 255 aaKnown RBP13.66□□□□□ -0.22
TPM1-220ENST00000559556 RING1Q06587 406 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 COBLL1Q53SF7 1204 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 ADGRF1Q5T601 910 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 TCERG1LQ5VWI1 586 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 MSANTD2Q6P1R3 559 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 DBX2Q6ZNG2 339 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 UBR7Q8N806 425 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 RNF139Q8WU17 664 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 KCTD13Q8WZ19 329 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 NDRG1Q92597 394 aaKnown RBP13.66□□□□□ -0.22
TPM1-220ENST00000559556 IPO9Q96P70 1041 aaKnown RBP13.66□□□□□ -0.22
TPM1-220ENST00000559556 LHX5Q9H2C1 402 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 LRRC4Q9HBW1 653 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 TM7SF3Q9NS93 570 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 ABCC13Q9NSE7 274 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 HESX1Q9UBX0 185 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 LHX6Q9UPM6 363 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 PCDHGB2Q9Y5G2 931 aa13.66□□□□□ -0.22
TPM1-220ENST00000559556 O00370 1275 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 FLRT2O43155 660 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 TSPAN3O60637 253 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 IGLV3-27P01718 113 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 HOXB3P14651 431 aaPredicted RBP13.65□□□□□ -0.22
TPM1-220ENST00000559556 AFF3P51826 1226 aaKnown RBP13.65□□□□□ -0.22
TPM1-220ENST00000559556 DAOAP59103 153 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 PTPRNQ16849 979 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 HLA-BQ31612 363 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 PKDCCQ504Y2 493 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 FNDC3BQ53EP0 1204 aaKnown RBP13.65□□□□□ -0.22
TPM1-220ENST00000559556 DCAF17Q5H9S7 520 aaPredicted RBP13.65□□□□□ -0.22
TPM1-220ENST00000559556 BSPRYQ5W0U4 402 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 LRSAM1Q6UWE0 723 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 CCNI2Q6ZMN8 369 aaPredicted RBP13.65□□□□□ -0.22
TPM1-220ENST00000559556 CHST9Q7L1S5 443 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 SLCO6A1Q86UG4 719 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 ADIPOR2Q86V24 386 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 FAM124AQ86V42 546 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 AHI1Q8N157 1196 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 SIX6OS1Q8N1H7 587 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 ZNF366Q8N895 744 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 PNPLA1Q8N8W4 532 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 CYB5D2Q8WUJ1 264 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 EDEM1Q92611 657 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 IRX2Q9BZI1 471 aaPredicted RBP13.65□□□□□ -0.22
TPM1-220ENST00000559556 C6orf106Q9H6K1 298 aaPredicted RBP13.65□□□□□ -0.22
TPM1-220ENST00000559556 OSGEPQ9NPF4 335 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 CNGB3Q9NQW8 809 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 ABCB8Q9NUT2 735 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 KIAA1522Q9P206 1035 aaPredicted RBP13.65□□□□□ -0.22
TPM1-220ENST00000559556 SFMBT1Q9UHJ3 866 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 GGA2Q9UJY4 613 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.65□□□□□ -0.22
TPM1-220ENST00000559556 SLCO1B1Q9Y6L6 691 aa13.65□□□□□ -0.22
TPM1-220ENST00000559556 LRRK1Q38SD2 2015 aa13.64□□□□□ -0.23
TPM1-220ENST00000559556 KIF26BQ2KJY2 2108 aa13.64□□□□□ -0.23
TPM1-220ENST00000559556 RP1P56715 2156 aa13.64□□□□□ -0.23
TPM1-220ENST00000559556 MSI1O43347 362 aaKnown RBP13.64□□□□□ -0.23
TPM1-220ENST00000559556 DKK1O94907 266 aa13.64□□□□□ -0.23
TPM1-220ENST00000559556 VDRP11473 427 aa13.64□□□□□ -0.23
TPM1-220ENST00000559556 PABPC1P11940 636 aaKnown RBP13.64□□□□□ -0.23
TPM1-220ENST00000559556 CD19P15391 556 aa13.64□□□□□ -0.23
TPM1-220ENST00000559556 TBXAS1P24557 533 aaPredicted RBP13.64□□□□□ -0.23
TPM1-220ENST00000559556 ACSL1P33121 698 aa13.64□□□□□ -0.23
TPM1-220ENST00000559556 PRCPP42785 496 aa13.64□□□□□ -0.23
TPM1-220ENST00000559556 SGSHP51688 502 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms