RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NUMBLQ9Y6R0 609 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 F5P12259 2224 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 TICRRQ7Z2Z1 1910 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 BDP1A6H8Y1 2624 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 MACROD2A1Z1Q3 448 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 RCCD1A6NED2 376 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 BUB1O43683 1085 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 LRCH4O75427 683 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 MLLT6P55198 1093 aaPredicted RBP9.56□□□□□ -0.88
LDLR-210ENST00000559340 PITX1P78337 314 aaPredicted RBP9.56□□□□□ -0.88
LDLR-210ENST00000559340 NRG1Q02297 640 aaPredicted RBP9.56□□□□□ -0.88
LDLR-210ENST00000559340 GAD2Q05329 585 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 SCAPQ12770 1279 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 LRRC38Q5VT99 294 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 TTC39BQ5VTQ0 682 aaPredicted RBP9.56□□□□□ -0.88
LDLR-210ENST00000559340 C1orf228Q6PIY5 440 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 NUDT18Q6ZVK8 323 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 POLNQ7Z5Q5 900 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 CHSY1Q86X52 802 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 FAM131BQ86XD5 332 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 RHOT1Q8IXI2 618 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 GJD3Q8N144 294 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 SLC44A3Q8N4M1 653 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 TRIM58Q8NG06 486 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 DNASE1L2Q92874 299 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 TMA16Q96EY4 203 aaKnown RBP9.56□□□□□ -0.88
LDLR-210ENST00000559340 MSANTD3Q96H12 275 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 BTBD6Q96KE9 485 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 XPO6Q96QU8 1125 aaKnown RBP9.56□□□□□ -0.88
LDLR-210ENST00000559340 EPAS1Q99814 870 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 SIK2Q9H0K1 926 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 LZTFL1Q9NQ48 299 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 DDX56Q9NY93 547 aaKnown RBP9.56□□□□□ -0.88
LDLR-210ENST00000559340 ALG6Q9Y672 507 aa9.56□□□□□ -0.88
LDLR-210ENST00000559340 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.56□□□□□ -0.88
LDLR-210ENST00000559340 REV3LO60673 3130 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 MIF4GDA9UHW6 222 aaKnown RBP9.55□□□□□ -0.88
LDLR-210ENST00000559340 PSTPIP1O43586 416 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 KIF5CO60282 957 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 BUB1BO60566 1050 aaPredicted RBP9.55□□□□□ -0.88
LDLR-210ENST00000559340 PAGE1O75459 146 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 MOCS3O95396 460 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 KLKB1P03952 638 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 SRFP11831 508 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 GLULP15104 373 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 TFE3P19532 575 aaPredicted RBP9.55□□□□□ -0.88
LDLR-210ENST00000559340 TACR2P21452 398 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 COMTP21964 271 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 L1CAMP32004 1257 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 ARL4AP40617 200 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 OXCT1P55809 520 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 ZXDBP98169 803 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 ZNF252P-AS1Q0IIN9 211 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 RUNX3Q13761 415 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 GRM2Q14416 872 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 KRT81Q14533 505 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 PDK2Q15119 407 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 E2F5Q15329 346 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 EML3Q32P44 896 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 ITPRIPL2Q3MIP1 535 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 MPP7Q5T2T1 576 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 SH3PXD2AQ5TCZ1 1133 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 OTUD1Q5VV17 481 aaPredicted RBP9.55□□□□□ -0.88
LDLR-210ENST00000559340 POTEHQ6S545 545 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 PEX26Q7Z412 305 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 BBS7Q8IWZ6 715 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 FAM217AQ8IXS0 508 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 UBALD2Q8IYN6 164 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 ADGRG2Q8IZP9 1017 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 UBL4BQ8N7F7 174 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 HJURPQ8NCD3 748 aaPredicted RBP9.55□□□□□ -0.88
LDLR-210ENST00000559340 DDI1Q8WTU0 396 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 RSPRY1Q96DX4 576 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 FAM83CQ9BQN1 747 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 PLA2G2FQ9BZM2 168 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 TRIM7Q9C029 511 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 C8orf33Q9H7E9 229 aaPredicted RBP9.55□□□□□ -0.88
LDLR-210ENST00000559340 CATSPERBQ9H7T0 1116 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 PRDM16Q9HAZ2 1276 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 SLC2A4RGQ9NR83 387 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 SPHK2Q9NRA0 654 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 OR12D3Q9UGF7 316 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 PCSK1NQ9UHG2 260 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 FZD10Q9ULW2 581 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 SORCS3Q9UPU3 1222 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 WNT6Q9Y6F9 365 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 DUSP10Q9Y6W6 482 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 ATG2BQ96BY7 2078 aa9.55□□□□□ -0.88
LDLR-210ENST00000559340 CCDC66A2RUB6 948 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 PRR33A8MZF0 331 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 H3BRJ5 948 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 DAPK3O43293 454 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 GREM1O60565 184 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 PALMO75781 387 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 ALADP13716 330 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 HCAR3P49019 387 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 ATXN1P54253 815 aaKnown RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 AUHQ13825 339 aaKnown RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 DHCR24Q15392 516 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms