RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 BST1Q10588 318 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 SEPT6Q14141 434 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 DUSP28Q4G0W2 176 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 ELMSAN1Q6PJG2 1045 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 ARCQ7LC44 396 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 TRIML2Q8N7C3 387 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 CHPT1Q8WUD6 406 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 AFG1LQ8WV93 481 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 EMID1Q96A84 441 aaPredicted RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 EME1Q96AY2 570 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 MRRFQ96E11 262 aaKnown RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 CNBD2Q96M20 576 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 PPP1R10Q96QC0 940 aaKnown RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 NEURL2Q9BR09 285 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 HEMGNQ9BXL5 484 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 UNKQ9C0B0 810 aaKnown RBP11.21□□□□□ -0.61
USP3-206ENST00000558157 TRPC7Q9HCX4 862 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 GPRC5CQ9NQ84 441 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 APPL1Q9UKG1 709 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 TRIM17Q9Y577 477 aa11.21□□□□□ -0.61
USP3-206ENST00000558157 GOLGA8RI6L899 631 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 ADAM23O75077 832 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 PDGFRBP09619 1106 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 PAX3P23760 479 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 CYP2J2P51589 502 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 TNFAIP2Q03169 654 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 PTK7Q13308 1070 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 ADGRE1Q14246 886 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 MDH1BQ5I0G3 518 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 IQSEC1Q6DN90 963 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 CAPN12Q6ZSI9 719 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 ZNF720Q7Z2F6 126 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 NANOGNBQ7Z5D8 188 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 KSR1Q8IVT5 923 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 WDR75Q8IWA0 830 aaKnown RBP11.2□□□□□ -0.62
USP3-206ENST00000558157 PPIL6Q8IXY8 311 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 TERB1Q8NA31 727 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 OR6J1Q8NGC5 347 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 PPTC7Q8NI37 304 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 SLC44A1Q8WWI5 657 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 NKD2Q969F2 451 aaPredicted RBP11.2□□□□□ -0.62
USP3-206ENST00000558157 ZMAT2Q96NC0 199 aaKnown RBP11.2□□□□□ -0.62
USP3-206ENST00000558157 RANBP9Q96S59 729 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 DHX33Q9H6R0 707 aaKnown RBP11.2□□□□□ -0.62
USP3-206ENST00000558157 TSC22D4Q9Y3Q8 395 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 HEY1Q9Y5J3 304 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 PSMC3P17980 439 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 CDH3P22223 829 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 NMT1P30419 496 aaKnown RBP11.2□□□□□ -0.62
USP3-206ENST00000558157 PTPN7P35236 360 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 FLT3LGP49771 235 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 CCR3P51677 355 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 SOX10P56693 466 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 NDUFA5Q16718 116 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 ODR4Q5SWX8 454 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 FAM102BQ5T8I3 360 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 IYDQ6PHW0 289 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 SLC2A7Q6PXP3 512 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 SLC47A2Q86VL8 602 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 PALM2Q8IXS6 379 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 RCOR2Q8IZ40 523 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 HM13Q8TCT9 377 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 CD99L2Q8TCZ2 262 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 DHRS1Q96LJ7 313 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 SRPK1Q96SB4 655 aaKnown RBP11.2□□□□□ -0.62
USP3-206ENST00000558157 FIZ1Q96SL8 496 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 PRDM16Q9HAZ2 1276 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 XPNPEP1Q9NQW7 623 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 GNPTGQ9UJJ9 305 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 PRPF19Q9UMS4 504 aaKnown RBP11.2□□□□□ -0.62
USP3-206ENST00000558157 GNEQ9Y223 722 aaKnown RBP11.2□□□□□ -0.62
USP3-206ENST00000558157 GIT1Q9Y2X7 761 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 PLLPQ9Y342 182 aa11.2□□□□□ -0.62
USP3-206ENST00000558157 BMP10O95393 424 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 LGALS2P05162 132 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 INHBAP08476 426 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 ZNF286BP0CG31 522 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 SSTR1P30872 391 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 STT3AP46977 705 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 VAMP7P51809 220 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 EPHB1P54762 984 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 MCCD1P59942 119 aaPredicted RBP11.19□□□□□ -0.62
USP3-206ENST00000558157 IRF5Q13568 498 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 EFTUD2Q15029 972 aaKnown RBP eCLIP11.19□□□□□ -0.621e-7■■□□□ 13.5
USP3-206ENST00000558157 KRT39Q6A163 491 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 DCLRE1AQ6PJP8 1040 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 PLPPR4Q7Z2D5 763 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 TRIB2Q92519 343 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 DLG3Q92796 817 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 FAM167AQ96KS9 214 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 GPATCH1Q9BRR8 931 aaKnown RBP11.19□□□□□ -0.62
USP3-206ENST00000558157 FRMD8P1Q9BZ68 369 aaPredicted RBP11.19□□□□□ -0.62
USP3-206ENST00000558157 C12orf65Q9H3J6 166 aaKnown RBP11.19□□□□□ -0.62
USP3-206ENST00000558157 ACP6Q9NPH0 428 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 THAP1Q9NVV9 213 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 DNPEPQ9ULA0 475 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 APOBEC2Q9Y235 224 aaKnown RBP11.19□□□□□ -0.62
USP3-206ENST00000558157 MEI4A8MW99 385 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 DGAT1O75907 488 aa11.19□□□□□ -0.62
USP3-206ENST00000558157 H6PDO95479 791 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms