RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 TKTL1P51854 596 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 COPAP53621 1224 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 COG7P83436 770 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 GFPT1Q06210 699 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-215ENST00000554656 PDE4CQ08493 712 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 TRIM14Q14142 442 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 ZNF234Q14588 700 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 TRIP4Q15650 581 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-215ENST00000554656 GOLGA7BQ2TAP0 167 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 SDE2Q6IQ49 451 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 TADA2BQ86TJ2 420 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 CPXM2Q8N436 756 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 KDF1Q8NAX2 398 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-215ENST00000554656 CCDC150Q8NCX0 1101 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 CEP76Q8TAP6 659 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 IQCDQ96DY2 449 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 NAP1L5Q96NT1 182 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-215ENST00000554656 CAMK1GQ96NX5 476 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 CDK5RAP1Q96SZ6 601 aaKnown RBP11.05□□□□□ -0.64
SHMT2-215ENST00000554656 UBXN6Q9BZV1 441 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 DNAAF2Q9NVR5 837 aaKnown RBP11.05□□□□□ -0.64
SHMT2-215ENST00000554656 ZMIZ1Q9ULJ6 1067 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 ZNF510Q9Y2H8 683 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 FREM2Q5SZK8 3169 aa11.05□□□□□ -0.64
SHMT2-215ENST00000554656 LGALS16A8MUM7 142 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 ARHGAP33O14559 1287 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 XPO1O14980 1071 aaKnown RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 SLC16A3O15427 465 aaKnown RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 ZBED1O96006 694 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 EPB41P11171 864 aaKnown RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 HOXD9P28356 352 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 CHKAP35790 457 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 PBX1P40424 430 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 SGSHP51688 502 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 BCAT1P54687 386 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 SIM1P81133 766 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 ADIGQ0VDE8 80 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 CUL2Q13617 745 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 MAN2A1Q16706 1144 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 PKDCCQ504Y2 493 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 DCAF17Q5H9S7 520 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 SPECC1LQ69YQ0 1117 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 RSRC2Q7L4I2 434 aaKnown RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 TMC6Q7Z403 805 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 ANKS1BQ7Z6G8 1248 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 METTL3Q86U44 580 aaKnown RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 ZSCAN30Q86W11 494 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 CACUL1Q86Y37 369 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 FMNL3Q8IVF7 1028 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 SPC24Q8NBT2 197 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 SLC35C1Q96A29 364 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 TOE1Q96GM8 510 aaKnown RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 ZSWIM1Q9BR11 485 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 TUBGCP2Q9BSJ2 902 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 DCLK3Q9C098 648 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 PRDM16Q9HAZ2 1276 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 ELOVL2Q9NXB9 296 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 WSB2Q9NYS7 404 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 KLK13Q9UKR3 277 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 TSPAN16Q9UKR8 245 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 ZKSCAN5Q9Y2L8 839 aa11.04□□□□□ -0.64
SHMT2-215ENST00000554656 DSPP15924 2871 aaKnown RBP11.04□□□□□ -0.64
SHMT2-215ENST00000554656 CABIN1Q9Y6J0 2220 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 YJEFN3A6XGL0 299 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 E7ENQ6 273 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 O00370 1275 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 MSI1O43347 362 aaKnown RBP11.03□□□□□ -0.64
SHMT2-215ENST00000554656 NRDCO43847 1150 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 TSPAN3O60637 253 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 OPHN1O60890 802 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 NDUFS2O75306 463 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 CALCAP01258 141 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 IGLV3-19P01714 112 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 NCAM1P13591 858 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 HLA-EP13747 358 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 CD6P30203 668 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 MTIF2P46199 727 aaKnown RBP11.03□□□□□ -0.64
SHMT2-215ENST00000554656 TPMTP51580 245 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 ATXN3P54252 364 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-215ENST00000554656 BNC1Q01954 994 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 BST2Q10589 180 aaKnown RBP11.03□□□□□ -0.64
SHMT2-215ENST00000554656 GRIK2Q13002 908 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 TBX2Q13207 712 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-215ENST00000554656 STARD3Q14849 445 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 PLEKHG6Q3KR16 790 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 TCERG1LQ5VWI1 586 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 RABEPKQ7Z6M1 372 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 TMPRSS6Q8IU80 811 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 RGL4Q8IZJ4 473 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 ARHGAP18Q8N392 663 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 HDDC3Q8N4P3 179 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 TTC39CQ8N584 583 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 UBA3Q8TBC4 463 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 WFDC5Q8TCV5 224 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 DNASE2BQ8WZ79 361 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 TFAP2BQ92481 460 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 EDEM1Q92611 657 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 PLD4Q96BZ4 506 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 GPR174Q9BXC1 333 aa11.03□□□□□ -0.64
SHMT2-215ENST00000554656 SLC32A1Q9H598 525 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms