RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ATP1A3P13637 1013 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 HOXB2P14652 356 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 CHRNB2P17787 502 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 GABRG2P18507 467 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 BCKDHBP21953 392 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 HLA-FP30511 346 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 P2RY2P41231 377 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 GABRB2P47870 512 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 POLR2FP61218 127 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 SLC6A3Q01959 620 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 SPEM2Q0P670 501 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 SYCP1Q15431 976 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 MAP7D1Q3KQU3 841 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 ANO6Q4KMQ2 910 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 USP39Q53GS9 565 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 DCAF6Q58WW2 860 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 ZC3H12AQ5D1E8 599 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 TAF3Q5VWG9 929 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 OR6B2Q6IFH4 312 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 CAVIN1Q6NZI2 390 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 SLC26A9Q7LBE3 791 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 ERMP1Q7Z2K6 904 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 ANKS1BQ7Z6G8 1248 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 DHX40Q8IX18 779 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 CHPFQ8IZ52 775 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 AOPEPQ8N6M6 819 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 GPR161Q8N6U8 529 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 TMEM35BQ8NCS4 154 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 ZNF397Q8NF99 534 aaPredicted RBP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 WFDC5Q8TCV5 224 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 EPS8L1Q8TE68 723 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 HMGB4Q8WW32 186 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 LMLNQ96KR4 655 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 PRICKLE1Q96MT3 831 aaPredicted RBP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 ERGIC2Q96RQ1 377 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 BPIFA3Q9BQP9 254 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 NUCKS1Q9H1E3 243 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 ELOVL2Q9NXB9 296 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 STON1Q9Y6Q2 735 aa10.67□□□□□ -0.7
CCDC88C-206ENST00000553437 MYOFQ9NZM1 2061 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 KCNU1A8MYU2 1149 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 TBL1XO60907 577 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 KRT37O76014 449 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 GFPT2O94808 682 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 MMEP08473 750 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 CDK11BP21127 795 aaKnown RBP10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 SOX5P35711 763 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 IL12RB1P42701 662 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 SNX16P57768 344 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 RPS24P62847 133 aaKnown RBP10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 CDK17Q00537 523 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 UBXN1Q04323 297 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 EIF4HQ15056 248 aaKnown RBP10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 CSRP2Q16527 193 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 MS4A13Q5J8X5 152 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 OTUD1Q5VV17 481 aaPredicted RBP10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 PMS2CLQ68D20 193 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 SDE2Q6IQ49 451 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 ADIPOR2Q86V24 386 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 ZDHHC17Q8IUH5 632 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 FRMD1Q8N878 549 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 ANKRD20A12PQ8NF67 263 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 IPO4Q8TEX9 1081 aaKnown RBP10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 SLC20A1Q8WUM9 679 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 RLN3Q8WXF3 142 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 SORCS1Q8WY21 1168 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 RMDN1Q96DB5 314 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 PRMT1Q99873 361 aaKnown RBP10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 ADAM33Q9BZ11 813 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 ARRDC1-AS1Q9H2J1 176 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 NLRC4Q9NPP4 1024 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 SEMA4GQ9NTN9 838 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 CALCOCO1Q9P1Z2 691 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 MBD1Q9UIS9 605 aaPredicted RBP10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 DAAM1Q9Y4D1 1078 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 CEP83Q9Y592 693 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 RAD54BQ9Y620 910 aa10.66□□□□□ -0.7
CCDC88C-206ENST00000553437 NPC1O15118 1278 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 TIMM44O43615 452 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 DAB1O75553 588 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 RHOBTB1O94844 696 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 LSM8O95777 96 aaKnown RBP10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 MOCS2O96007 188 aaPredicted RBP10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 CYP1A1P04798 512 aaPredicted RBP10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 PABPC1P11940 636 aaKnown RBP10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 NDUFV2P19404 249 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 CD70P32970 193 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 NOS2P35228 1153 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 SCNN1AP37088 669 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 NOMO3P69849 1222 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 FMO1Q01740 532 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 CDR2Q01850 454 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 ZNF234Q14588 700 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 IQCB1Q15051 598 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 KLHL40Q2TBA0 621 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 C2CD6Q53TS8 623 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 PLA2G2CQ5R387 149 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 RAP1GAP2Q684P5 730 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms