RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 PTPRAP18433 802 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 CYP3A5P20815 502 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 GRIA2P42262 883 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 NR2C2P49116 596 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 RGS7P49802 495 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 CHN2P52757 468 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 ABCE1P61221 599 aaKnown RBP18.05■□□□□ 0.48
SYNE3-202ENST00000553340 INSCQ1MX18 579 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 JADE1Q6IE81 842 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 KCNT2Q6UVM3 1135 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 FRMD7Q6ZUT3 714 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 OPTNQ96CV9 577 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 KCNK16Q96T55 309 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 IFT122Q9HBG6 1241 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 COPG2Q9UBF2 871 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 KIAA1257Q9ULG3 409 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 ARHGAP26Q9UNA1 814 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 ZNF195O14628 629 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 RALBP11234 206 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 MLNP12872 115 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 NDST1P52848 882 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 SLC10A2Q12908 348 aaPredicted RBP18.05■□□□□ 0.48
SYNE3-202ENST00000553340 GRAMD1BQ3KR37 738 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 FSCBQ5H9T9 825 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 VWA5B1Q5TIE3 1220 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 CATSPERGQ6ZRH7 1159 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 TFB1MQ8WVM0 346 aaKnown RBP18.05■□□□□ 0.48
SYNE3-202ENST00000553340 HPDLQ96IR7 371 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 TNFSF13BQ9Y275 285 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 LCTP09848 1927 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 ITGA2BP08514 1039 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 ACAT1P24752 427 aaKnown RBP18.04■□□□□ 0.48
SYNE3-202ENST00000553340 PRDX6P30041 224 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 HARS2P49590 506 aaKnown RBP18.04■□□□□ 0.48
SYNE3-202ENST00000553340 NAB1Q13506 487 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 OLFML1Q6UWY5 402 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 KBTBD6Q86V97 674 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 DRAXINQ8NBI3 349 aaPredicted RBP18.04■□□□□ 0.48
SYNE3-202ENST00000553340 B4GALNT2Q8NHY0 566 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 CLMNQ96JQ2 1002 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 QKIQ96PU8 341 aaKnown RBP eCLIP18.04■□□□□ 0.48
SYNE3-202ENST00000553340 MORF4L1Q9UBU8 362 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 IGKV6-21A0A0C4DH24 114 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 A6NJR5 290 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 C19orf81C9J6K1 198 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 DCXO43602 365 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 COX4I1P13073 169 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 MX2P20592 715 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 MTTPP55157 894 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 STILQ15468 1287 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 NBPF12Q5TAG4 269 aaPredicted RBP18.04■□□□□ 0.48
SYNE3-202ENST00000553340 POTEAQ6S8J7 498 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 ATG14Q6ZNE5 492 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 CXorf38Q8TB03 319 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 HOXC10Q9NYD6 342 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 TMEM216Q9P0N5 145 aa18.04■□□□□ 0.48
SYNE3-202ENST00000553340 AP1G1O43747 822 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 EGFRP00533 1210 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 PFKMP08237 780 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 TYK2P29597 1187 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 ARRB2P32121 409 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 HDAC4P56524 1084 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 CRADDP78560 199 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 SLC6A3Q01959 620 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 FOLH1Q04609 750 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 INCA1Q0VD86 236 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 LRRC23Q53EV4 343 aaPredicted RBP18.03■□□□□ 0.48
SYNE3-202ENST00000553340 DCAF15Q66K64 600 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 UGT2A3Q6UWM9 527 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 METTL7BQ6UX53 244 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 SPATA24Q86W54 205 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 PHTF2Q8N3S3 785 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 VPS33BQ9H267 617 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 DHX35Q9H5Z1 703 aaKnown RBP18.03■□□□□ 0.48
SYNE3-202ENST00000553340 TXNDC16Q9P2K2 825 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 DOCK1Q14185 1865 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 H3BNX3 289 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 GPR25O00155 361 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 PRKCGP05129 697 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 STAG3L1P0CL83 205 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 FDFT1P37268 417 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 PEX6Q13608 980 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 ITGA9Q13797 1035 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 MAP7Q14244 749 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 GOLGA7BQ2TAP0 167 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 SATL1Q86VE3 508 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 EFCAB3Q8N7B9 438 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 CHST13Q8NET6 341 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 NT5C1AQ9BXI3 368 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 UBE2OQ9C0C9 1292 aaKnown RBP18.03■□□□□ 0.48
SYNE3-202ENST00000553340 EPB41L1Q9H4G0 881 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 DTNAQ9Y4J8 743 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 CDY2AQ9Y6F7 541 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 CDY1Q9Y6F8 540 aa18.03■□□□□ 0.48
SYNE3-202ENST00000553340 SPDYE16A6NNV3 312 aaPredicted RBP18.02■□□□□ 0.48
SYNE3-202ENST00000553340 GJB1P08034 283 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 CPA3P15088 417 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 VAV1P15498 845 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 PGAM1P18669 254 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 DPYSL2Q16555 572 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms