RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ZDHHC5Q9C0B5 715 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 ST7Q9NRC1 585 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 TMEM51Q9NW97 253 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 CHMP5Q9NZZ3 219 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 USP36Q9P275 1121 aaKnown RBP11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 SUN2Q9UH99 717 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 SLC12A6Q9UHW9 1150 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 RAD54BQ9Y620 910 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 ACACBO00763 2458 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 GON4LQ3T8J9 2241 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 ARHGAP33O14559 1287 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 MSI1O43347 362 aaKnown RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 TSPAN3O60637 253 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 OPHN1O60890 802 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 IGLV3-19P01714 112 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 DLDP09622 509 aaKnown RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 C7P10643 843 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 PABPC1P11940 636 aaKnown RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 HLA-FP30511 346 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 RDXP35241 583 aaKnown RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 YWHAZP63104 245 aaKnown RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 SLC14A1Q13336 389 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 TPD52L1Q16890 204 aaPredicted RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 UAP1L1Q3KQV9 507 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 SH3PXD2AQ5TCZ1 1133 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 PIK3R6Q5UE93 754 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 PSAPL1Q6NUJ1 521 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 TRIM65Q6PJ69 517 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 CHST9Q7L1S5 443 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 KIAA0907Q7Z7F0 614 aaPredicted RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 CREBRFQ8IUR6 639 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 ARHGEF19Q8IW93 802 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 FAM114A1Q8IWE2 563 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 RGL4Q8IZJ4 473 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 HJURPQ8NCD3 748 aaPredicted RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 OR2T3Q8NH03 318 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 FIBINQ8TAL6 211 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 ZNF606Q8WXB4 792 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 FAM149B1Q96BN6 582 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 P2RY11Q96G91 374 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 TOE1Q96GM8 510 aaKnown RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 HSPA12BQ96MM6 686 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 KREMEN1Q96MU8 473 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 NOX5Q96PH1 765 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 PPP1R9BQ96SB3 815 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 MKRN2Q9H000 416 aaKnown RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 MIS12Q9H081 205 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 THAP9Q9H5L6 903 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 POPDC2Q9HBU9 364 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 CAPN10Q9HC96 672 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 WSB2Q9NYS7 404 aaPredicted RBP11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 DACH1Q9UI36 760 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 GGA2Q9UJY4 613 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 CLEC4EQ9ULY5 219 aa11.31□□□□□ -0.6
VTI1BP3-201ENST00000550220 MEI4A8MW99 385 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 THAP12O43422 761 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 TBL1XO60907 577 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 GABBR2O75899 941 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 LETM1O95202 739 aaPredicted RBP11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 MOCS3O95396 460 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 APOEP02649 317 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 ASLP04424 464 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 GLI1P08151 1106 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 SLC2A3P11169 496 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 POLR2EP19388 210 aaKnown RBP11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 GNA15P30679 374 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 MAPK8P45983 427 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 TPMTP51580 245 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 ST8SIA6P61647 398 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 PTK2Q05397 1052 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 CAMK2GQ13555 558 aaPredicted RBP11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 CAMK4Q16566 473 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 EXOC3L4Q17RC7 722 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 FNDC3BQ53EP0 1204 aaKnown RBP11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 CT47A1Q5JQC4 288 aaPredicted RBP11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 TMEM215Q68D42 235 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 MBLAC2Q68D91 279 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 SLC41A1Q8IVJ1 513 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 MFN1Q8IWA4 741 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 DEFB119Q8N690 84 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 KDM1BQ8NB78 822 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 DQX1Q8TE96 717 aaKnown RBP11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 DNASE2BQ8WZ79 361 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 TMEM245Q9H330 911 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 ABCB8Q9NUT2 735 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 ASNSD1Q9NWL6 643 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 APEX2Q9UBZ4 518 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 TJP2Q9UDY2 1190 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 SCML1Q9UN30 329 aa11.3□□□□□ -0.6
VTI1BP3-201ENST00000550220 A0A1B0GTW7 788 aa11.29□□□□□ -0.6
VTI1BP3-201ENST00000550220 METTL12A8MUP2 240 aa11.29□□□□□ -0.6
VTI1BP3-201ENST00000550220 PIK3R2O00459 728 aa11.29□□□□□ -0.6
VTI1BP3-201ENST00000550220 RNASEH1O60930 286 aaKnown RBP11.29□□□□□ -0.6
VTI1BP3-201ENST00000550220 USP8P40818 1118 aa11.29□□□□□ -0.6
VTI1BP3-201ENST00000550220 MTIF2P46199 727 aaKnown RBP11.29□□□□□ -0.6
VTI1BP3-201ENST00000550220 COPAP53621 1224 aa11.29□□□□□ -0.6
VTI1BP3-201ENST00000550220 OXCT1P55809 520 aa11.29□□□□□ -0.6
VTI1BP3-201ENST00000550220 BPIFB4P59827 614 aa11.29□□□□□ -0.6
VTI1BP3-201ENST00000550220 SEMA3BQ13214 749 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms