RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.35□□□□□ -0.27
SCAF11-208ENST00000546534 CFAP46Q8IYW2 2715 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 TEX51A0A1B0GUA7 166 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 J3QKU1 62 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 VILLO15195 856 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 RFPL3O75679 317 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 IGHV4-34P06331 123 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 C1SP09871 688 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 CDK4P11802 303 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 P4HA1P13674 534 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 FECHP22830 423 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 ASPAP45381 313 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 ACADVLP49748 655 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 AP3M2P53677 418 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 C21orf59P57076 290 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 RACK1P63244 317 aaKnown RBP13.34□□□□□ -0.27
SCAF11-208ENST00000546534 CFHR1Q03591 330 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 ZBTB16Q05516 673 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 SHBQ15464 509 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 SGSM1Q2NKQ1 1148 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 HES3Q5TGS1 186 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 SPOPLQ6IQ16 392 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 C12orf56Q8IXR9 622 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 TTC13Q8NBP0 860 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 BAP1Q92560 729 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 ELF4Q99607 663 aaPredicted RBP13.34□□□□□ -0.27
SCAF11-208ENST00000546534 ACE2Q9BYF1 805 aaPredicted RBP13.34□□□□□ -0.27
SCAF11-208ENST00000546534 LRRC27Q9C0I9 530 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 SGK2Q9HBY8 427 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 PRSS16Q9NQE7 514 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 PLA2G4CQ9UP65 541 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 USP3Q9Y6I4 520 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 UBE4BO95155 1302 aa13.34□□□□□ -0.27
SCAF11-208ENST00000546534 STX6O43752 255 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 KIF20AO95235 890 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 DNTTP04053 509 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 WNT1P04628 370 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 ITGAVP06756 1048 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 HOXD9P28356 352 aaPredicted RBP13.33□□□□□ -0.28
SCAF11-208ENST00000546534 HLA-FP30511 346 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 TLE3Q04726 772 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 EHHADHQ08426 723 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 MMRN1Q13201 1228 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 SLC39A14Q15043 492 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 KIAA0895LQ68EN5 471 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 FBXL19Q6PCT2 694 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 FAM217AQ8IXS0 508 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 SAP25Q8TEE9 199 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 TSC1Q92574 1164 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 FGF11Q92914 225 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 SLC6A18Q96N87 628 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 CDK5RAP1Q96SZ6 601 aaKnown RBP13.33□□□□□ -0.28
SCAF11-208ENST00000546534 SLC4A5Q9BY07 1137 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 PPP4R2Q9NY27 417 aa13.33□□□□□ -0.28
SCAF11-208ENST00000546534 COL5A1P20908 1838 aaPredicted RBP13.33□□□□□ -0.28
SCAF11-208ENST00000546534 TENM4Q6N022 2769 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 A0A1W2PPC4 97 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 SLC12A8A0AV02 714 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 ABCB4P21439 1286 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 DLG4P78352 724 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 CCDC173Q0VFZ6 552 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 CNNM4Q6P4Q7 775 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 CHST9Q7L1S5 443 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 ADIPOR2Q86V24 386 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 ZC3H3Q8IXZ2 948 aaKnown RBP13.32□□□□□ -0.28
SCAF11-208ENST00000546534 EID2Q8N6I1 236 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 TMEM176AQ96HP8 235 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 ARID3AQ99856 593 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 FBRSQ9HAH7 460 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 EBF2Q9HAK2 575 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 SLC24A3Q9HC58 644 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 ABCB8Q9NUT2 735 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 MARCH2Q9P0N8 246 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 CGNQ9P2M7 1197 aaKnown RBP13.32□□□□□ -0.28
SCAF11-208ENST00000546534 TFIP11Q9UBB9 837 aaKnown RBP13.32□□□□□ -0.28
SCAF11-208ENST00000546534 STRIP2Q9ULQ0 834 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 MORC2Q9Y6X9 1032 aaPredicted RBP13.32□□□□□ -0.28
SCAF11-208ENST00000546534 MYH10P35580 1976 aa13.32□□□□□ -0.28
SCAF11-208ENST00000546534 FAM47DPA6NHR8 397 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 BRINP1O60477 761 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 ASS1P00966 412 aaKnown RBP13.31□□□□□ -0.28
SCAF11-208ENST00000546534 RPN1P04843 607 aaKnown RBP13.31□□□□□ -0.28
SCAF11-208ENST00000546534 TRIM21P19474 475 aaKnown RBP13.31□□□□□ -0.28
SCAF11-208ENST00000546534 CXADRP78310 365 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 AMPD3Q01432 767 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 INCA1Q0VD86 236 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 KNOP1Q1ED39 458 aaKnown RBP13.31□□□□□ -0.28
SCAF11-208ENST00000546534 ZACNQ401N2 412 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 TTC31Q49AM3 519 aaPredicted RBP13.31□□□□□ -0.28
SCAF11-208ENST00000546534 MPPE1Q53F39 396 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 ZNF776Q68DI1 518 aaPredicted RBP13.31□□□□□ -0.28
SCAF11-208ENST00000546534 UNC13DQ70J99 1090 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 RSRC2Q7L4I2 434 aaKnown RBP13.31□□□□□ -0.28
SCAF11-208ENST00000546534 SPACA3Q8IXA5 215 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 WFIKKN2Q8TEU8 576 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 TAF4BQ92750 862 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 USP28Q96RU2 1077 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 NT5C1AQ9BXI3 368 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 DUSP16Q9BY84 665 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 CUEDC2Q9H467 287 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms