RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 VCX3AQ9NNX9 186 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 NCF1BA6NI72 391 aaPredicted RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 NCF1CA8MVU1 366 aaPredicted RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 NCF1P14598 390 aaPredicted RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 STMN1P16949 149 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 TFE3P19532 575 aaPredicted RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 HADHAP40939 763 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 LHX1P48742 406 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 SERPINB8P50452 374 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 FSCN1Q16658 493 aaKnown RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 CMC1Q7Z7K0 106 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 WNT8BQ93098 351 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 GLT1D1Q96MS3 346 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 TEPSINQ96N21 525 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 MRPL1Q9BYD6 325 aaKnown RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 PAPSS1O43252 624 aaPredicted RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 RGS20O76081 388 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 ABHD2P08910 425 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 ERCC2P18074 760 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 PTPN7P35236 360 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 KCNMB4Q86W47 210 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 SUGP1Q8IWZ8 645 aaKnown RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 TMEM130Q8N3G9 435 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 USP13Q92995 863 aaPredicted RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 STARD13Q9Y3M8 1113 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 A0A0A0MRY4 1105 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 GPR182O15218 404 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 TIMM44O43615 452 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 NPR3P17342 541 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 C6orf10Q5SRN2 563 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 RNASEH2BQ5TBB1 312 aaKnown RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 RFWD2Q8NHY2 731 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 NKD2Q969F2 451 aaPredicted RBP16.08■□□□□ 0.16
CUX1-211ENST00000546411 ASIC4Q96FT7 647 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 SPATA13Q96N96 652 aa16.08■□□□□ 0.16
CUX1-211ENST00000546411 CHADO15335 359 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 EDF1O60869 148 aaKnown RBP16.07■□□□□ 0.16
CUX1-211ENST00000546411 HOXC6P09630 235 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 WNT7BP56706 349 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 SNX30Q5VWJ9 437 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 UNC5AQ6ZN44 842 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 TAS1R3Q7RTX0 852 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 SPATA6LQ8N4H0 392 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 CLEC4CQ8WTT0 213 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 FBXO32Q969P5 355 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 NCLNQ969V3 563 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 EME1Q96AY2 570 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 BTBD10Q9BSF8 475 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 RBPJLQ9UBG7 517 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 ARHGAP26Q9UNA1 814 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 LYPLA1O75608 230 aaPredicted RBP16.07■□□□□ 0.16
CUX1-211ENST00000546411 ICAM3P32942 547 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 NOS2P35228 1153 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 NR2C2P49116 596 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 MBTD1Q05BQ5 628 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 FLOT2Q14254 428 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 RARS2Q5T160 578 aaKnown RBP16.07■□□□□ 0.16
CUX1-211ENST00000546411 SDHAF4Q5VUM1 108 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 IQSEC1Q6DN90 963 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 ZNF470Q6ECI4 717 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 ALYREFQ86V81 257 aaKnown RBP16.07■□□□□ 0.16
CUX1-211ENST00000546411 CCNJLQ8IV13 435 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 MUC3BQ9H195 1237 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 LHX5Q9H2C1 402 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 UTP6Q9NYH9 597 aaKnown RBP16.07■□□□□ 0.16
CUX1-211ENST00000546411 ACTL7BQ9Y614 415 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 TMEM63AO94886 807 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 TUBP50607 506 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 CDK16Q00536 496 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 NOMO1Q15155 1222 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 RBBP7Q16576 425 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 CYP1B1Q16678 543 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 FAM83EQ2M2I3 478 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 LINC00523Q86TU6 105 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 C12orf50Q8NA57 414 aaPredicted RBP16.07■□□□□ 0.16
CUX1-211ENST00000546411 SHCBP1Q8NEM2 672 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 CENPKQ9BS16 269 aa16.07■□□□□ 0.16
CUX1-211ENST00000546411 ZC3H4Q9UPT8 1303 aaKnown RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 TCRBV7S3A2A0A539 114 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 SRRM3A6NNA2 597 aaPredicted RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 H0YGN5 161 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 NAGLUP54802 743 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 BTKQ06187 659 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 AP1ARQ63HQ0 302 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 PDPK2PQ6A1A2 396 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 ANGPTL8Q6UXH0 198 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 ZDHHC17Q8IUH5 632 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 DCP1BQ8IZD4 617 aaKnown RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 DDX1Q92499 740 aaKnown RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 TAGLN3Q9UI15 199 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 NFS1Q9Y697 457 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 NRCAMQ92823 1304 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 SLC12A8A0AV02 714 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 SPDYE5A6NIY4 337 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 SUPT3HB4E1H0 165 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 SUPT3HO75486 399 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 PROCP04070 461 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 ATP6V1B1P15313 513 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 CHRM3P20309 590 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 ATP4AP20648 1035 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms