RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	HAPLN3	Q96S86	360 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	EBF3	Q9H4W6	596 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	DHX35	Q9H5Z1	703 aa	Known RBP	10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	GPATCH2L	Q9NWQ4	482 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	AMFR	Q9UKV5	643 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	FZD10	Q9ULW2	581 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	HS3ST4	Q9Y661	456 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	MYH10	P35580	1976 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	TYW5	A2RUC4	315 aa	Known RBP	10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	GRID2IP	A4D2P6	1211 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	DAPK3	O43293	454 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	CREB3	O43889	395 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	KIF5C	O60282	957 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	FTCD	O95954	541 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	ADH1C	P00326	375 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	ARSA	P15289	507 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	TCF4	P15884	667 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	TACR2	P21452	398 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	IL1R2	P27930	398 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	DNA2	P51530	1060 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	AIF1	P55008	147 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	MLLT6	P55198	1093 aa	Predicted RBP	10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	TAS2R40	P59535	323 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	TNK2	Q07912	1038 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	TDG	Q13569	410 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	AUH	Q13825	339 aa	Known RBP	10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	PPP6R3	Q5H9R7	873 aa	Predicted RBP	10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	MS4A13	Q5J8X5	152 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	TJAP1	Q5JTD0	557 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	RABGAP1L	Q5R372	815 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	ACBD5	Q5T8D3	534 aa	Predicted RBP	10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	PIK3R6	Q5UE93	754 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	NADSYN1	Q6IA69	706 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	RWDD4	Q6NW29	188 aa	Known RBP	10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	CCDC117	Q8IWD4	279 aa	Predicted RBP	10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	REXO1L1P	Q8IX06	675 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	RHOT1	Q8IXI2	618 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	ADGRG2	Q8IZP9	1017 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	CPA6	Q8N4T0	437 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	KIAA1958	Q8N8K9	716 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	KCTD6	Q8NC69	237 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	DDI1	Q8WTU0	396 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	IRF7	Q92985	503 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	RPRD1A	Q96P16	312 aa	Predicted RBP	10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	PEBP4	Q96S96	227 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	FAM83C	Q9BQN1	747 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	SNRNP25	Q9BV90	132 aa	Known RBP	10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	OSBPL2	Q9H1P3	480 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	ANLN	Q9NQW6	1124 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	STIM2	Q9P246	746 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	OR12D3	Q9UGF7	316 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	VANGL2	Q9ULK5	521 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	AP4E1	Q9UPM8	1137 aa		10.51	□□□□□ -0.73
CPSF7-221	ENST00000543545	C19orf67	A6NJJ6	358 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	USP27X	A6NNY8	438 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	TBL1X	O60907	577 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	RARA	P10276	462 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	MSN	P26038	577 aa	Known RBP	10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	SLC6A4	P31645	630 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	CDH6	P55285	790 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	GAD2	Q05329	585 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	SCAP	Q12770	1279 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	RUNX3	Q13761	415 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	DHCR24	Q15392	516 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	EML3	Q32P44	896 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	ITPRIPL2	Q3MIP1	535 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	MPPE1	Q53F39	396 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	FAM133B	Q5BKY9	247 aa	Known RBP	10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZNF569	Q5MCW4	686 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	LY6G5C	Q5SRR4	150 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	TXNRD3NB	Q6F5E7	133 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	FBXL22	Q6P050	247 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	C14orf80	Q86SX3	495 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	TMEM25	Q86YD3	366 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	RNF135	Q8IUD6	432 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	PSTK	Q8IV42	348 aa	Known RBP	10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	MAP7D3	Q8IWC1	876 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	CFAP52	Q8N1V2	620 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	PYROXD2	Q8N2H3	581 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	TRIM58	Q8NG06	486 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	ASIC4	Q96FT7	647 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	C1orf74	Q96LT6	269 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	EPAS1	Q99814	870 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	BBS2	Q9BXC9	721 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	MAGEB5	Q9BZ81	275 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	IRX2	Q9BZI1	471 aa	Predicted RBP	10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	ECT2	Q9H8V3	914 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	SPHK2	Q9NRA0	654 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	KLHL11	Q9NVR0	708 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	PLK2	Q9NYY3	685 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	STOML2	Q9UJZ1	356 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	CAPN6	Q9Y6Q1	641 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	DOCK6	Q96HP0	2047 aa		10.5	□□□□□ -0.73
CPSF7-221	ENST00000543545	LRRD1	A4D1F6	860 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545		E9PAM4	449 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	NEDD8-MDP1	E9PL57	170 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545		H3BRJ5	948 aa		10.49	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms