RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CD2BP2O95400 341 aaKnown RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 OLFM2O95897 454 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 TBX18O95935 607 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 ADRB2P07550 413 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 MUTP22033 750 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 ACP1P24666 158 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 PRKCHP24723 683 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 EPHA8P29322 1005 aaPredicted RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 PNPLA4P41247 253 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 AFMP43652 599 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 CACNA2D1P54289 1103 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 RIPPLY3P57055 190 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 EVCP57679 992 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 DNM1Q05193 864 aaKnown RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 TRIM29Q14134 588 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 DHX8Q14562 1220 aaKnown RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 NCAPHQ15003 741 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 SOWAHAQ2M3V2 549 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 FNDC3BQ53EP0 1204 aaKnown RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 LCE2AQ5TA79 106 aaPredicted RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 KIAA0895LQ68EN5 471 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 FAM171BQ6P995 826 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 VSTM1Q6UX27 236 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 SRRM1Q8IYB3 904 aaKnown RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 DIS3L2Q8IYB7 885 aaKnown RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 NUP93Q8N1F7 819 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 CACTIN-AS1Q8N1I8 211 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 FAM26EQ8N5C1 309 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 MYCT1Q8N699 235 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 KIAA1958Q8N8K9 716 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 WASF1Q92558 559 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 TNFRSF25Q93038 417 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 PCED1BQ96HM7 432 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 MED10Q9BTT4 135 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 TTLL2Q9BWV7 592 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 CCSER1Q9C0I3 900 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 PCED1AQ9H1Q7 454 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 ASB7Q9H672 318 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 EBF2Q9HAK2 575 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 C17orf75Q9HAS0 396 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 ASCL3Q9NQ33 180 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 CRTAC1Q9NQ79 661 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 ELOVL2Q9NXB9 296 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 SCHIP1Q9P0W5 487 aaPredicted RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 KCNG1Q9UIX4 513 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 LSM7Q9UK45 103 aaKnown RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 AGO2Q9UKV8 859 aaKnown RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 CDH9Q9ULB4 789 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 CYP46A1Q9Y6A2 500 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 CACNA1DQ01668 2161 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 A0A1W2PPC4 97 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 SERTM1A2A2V5 107 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 PMS2P1A4D2B8 440 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 H0YCG3 227 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 MEN1O00255 615 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 TRIM38O00635 465 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 YKT6O15498 198 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 TNFSF15O95150 251 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 RTN3O95197 1032 aaPredicted RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 IGLV3-19P01714 112 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 IGHV4-34P06331 123 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 HMBSP08397 361 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 THEGLP0DJG4 465 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 SFTPCP11686 197 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 PCSK2P16519 638 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 POU3F2P20265 443 aaPredicted RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 ACO1P21399 889 aaKnown RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 BRD2P25440 801 aaKnown RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 TRAPPC10P48553 1259 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 ZNF132P52740 706 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 EPHA4P54764 986 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 INHBCP55103 352 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 NCKAP1LP55160 1127 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 RPS14P62263 151 aaKnown RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 NOP14P78316 857 aaKnown RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 CYP4F2P78329 520 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 EHHADHQ08426 723 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 SFSWAPQ12872 951 aaKnown RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 SRSF6Q13247 344 aaKnown RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 CLN3Q13286 438 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 TGIF1Q15583 401 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 MAPRE1Q15691 268 aaKnown RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 SLC45A4Q5BKX6 768 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 COX20Q5RI15 118 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 KRT79Q5XKE5 535 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 DIEXFQ68CQ4 756 aaKnown RBP5.02□□□□□ -1.61
LIMS1-214ENST00000542845 SLC39A4Q6P5W5 647 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 TREML4Q6UXN2 200 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 HTR3DQ70Z44 454 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 KCNK18Q7Z418 384 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 ATCAYQ86WG3 371 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 JAMLQ86YT9 394 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 CCDC83Q8IWF9 413 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 FBXL16Q8N461 479 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 PDZD8Q8NEN9 1154 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 OR6B3Q8NGW1 331 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 OR2T3Q8NH03 318 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 SCAMP5Q8TAC9 235 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 MAPK15Q8TD08 544 aa5.02□□□□□ -1.61
LIMS1-214ENST00000542845 CYB5D2Q8WUJ1 264 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms