RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 NDRG1Q92597 394 aaKnown RBP18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 PAGE5Q96GU1 130 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 HEXIM2Q96MH2 286 aaKnown RBP18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 UBXN6Q9BZV1 441 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 BTBD1Q9H0C5 482 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 FAM13BQ9NYF5 915 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 TRAF3IP3Q9Y228 551 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 KALRNO60229 2985 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 ARID1BQ8NFD5 2236 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 TULP2O00295 520 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 FSBPO95073 299 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 IGHV4-34P06331 123 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 PDIA4P13667 645 aaKnown RBP18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 PDE4CQ08493 712 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 FOXD4L6Q3SYB3 417 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 FOXD4L5Q5VV16 416 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 PM20D1Q6GTS8 502 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 FOXD4L3Q6VB84 417 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 FMNL3Q8IVF7 1028 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 CEP57L1Q8IYX8 460 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 ADAM32Q8TC27 787 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 WFDC5Q8TCV5 224 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 FOXD4L4Q8WXT5 416 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 ABCB8Q9NUT2 735 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 STOML2Q9UJZ1 356 aa18.6■□□□□ 0.57
CLSTN3-214ENST00000542663 ME1P48163 572 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 SGSHP51688 502 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 TKTL1P51854 596 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 RAD23BP54727 409 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 ZBTB16Q05516 673 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 WFIKKN2Q8TEU8 576 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 SEMA4DQ92854 862 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 DCBLD2Q96PD2 775 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 ULBP1Q9BZM6 244 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 MMRN2Q9H8L6 949 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 FBRSQ9HAH7 460 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 GGA2Q9UJY4 613 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 PLA2G4CQ9UP65 541 aa18.59■□□□□ 0.57
CLSTN3-214ENST00000542663 EIF4E1BA6NMX2 242 aaKnown RBP18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 E9PAM4 449 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 PLK4O00444 970 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 ZBED1O96006 694 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 DNTTP04053 509 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 PRB1P04280 392 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 NR2F2P24468 414 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 CLDN6P56747 220 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 NFIL3Q16649 462 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 ARHGAP17Q68EM7 881 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 INTS8Q75QN2 995 aaKnown RBP18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 AHI1Q8N157 1196 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 ANKRD52Q8NB46 1076 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 MYO19Q96H55 970 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 TMEM176AQ96HP8 235 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 MTG2Q9H4K7 406 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 SGK2Q9HBY8 427 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 CISHQ9NSE2 258 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 FTSJ1Q9UET6 329 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 SFMBT1Q9UHJ3 866 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 HBS1LQ9Y450 684 aaKnown RBP18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 PTPRQQ9UMZ3 2332 aa18.58■□□□□ 0.56
CLSTN3-214ENST00000542663 A0A1B0GTQ1 180 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 K7ELQ4 463 aaPredicted RBP18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 CBX4O00257 560 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 CALUO43852 315 aaPredicted RBP18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 PABPC1P11940 636 aaKnown RBP18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 ITPKBP27987 946 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 CD70P32970 193 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 ABCG1P45844 678 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 HARS2P49590 506 aaKnown RBP18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 BCAT1P54687 386 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 MCCD1P59942 119 aaPredicted RBP18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 PRAMEF14Q5SWL7 426 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 ADGRF1Q5T601 910 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 MBLAC2Q68D91 279 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 TMPRSS12Q86WS5 348 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 GATAD2AQ86YP4 633 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 PIP4K2CQ8TBX8 421 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 TMA16Q96EY4 203 aaKnown RBP18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 DNAI2Q9GZS0 605 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 EBF2Q9HAK2 575 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 TMEM8AQ9HCN3 771 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 OLA1Q9NTK5 396 aaKnown RBP18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 SERGEFQ9UGK8 458 aa18.57■□□□□ 0.56
CLSTN3-214ENST00000542663 ASH1LQ9NR48 2969 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 VILLO15195 856 aa18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 MSI1O43347 362 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 C1QL1O75973 258 aa18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 WNT1P04628 370 aa18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 DLDP09622 509 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 ZNF445P59923 1031 aa18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 RACK1P63244 317 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 ENPEPQ07075 957 aa18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 SHBQ15464 509 aa18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 TTC31Q49AM3 519 aaPredicted RBP18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 ZNF776Q68DI1 518 aaPredicted RBP18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 KIAA0895LQ68EN5 471 aa18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 ADAT2Q7Z6V5 191 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 FAM186BQ8IYM0 893 aa18.56■□□□□ 0.56
CLSTN3-214ENST00000542663 ENGASEQ8NFI3 743 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms