RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PIGVQ9NUD9 493 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 FBXL21Q9UKT6 434 aa18.16■□□□□ 0.5
CLSTN3-210ENST00000540931 SYNJ2BP-COX16A0A087WUM0 186 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 F5H5T6 163 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 ARNTLO00327 626 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 CCP110O43303 1012 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 ATMINO43313 823 aaPredicted RBP18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 NOP2P46087 812 aaKnown RBP18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 NRG1Q02297 640 aaPredicted RBP18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 SCAPQ12770 1279 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 CDO1Q16878 200 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 EFHC2Q5JST6 749 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 ZNF662Q6ZS27 426 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 BMP8AQ7Z5Y6 402 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 BBS7Q8IWZ6 715 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 RNF10Q8N5U6 811 aaKnown RBP18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 TMA16Q96EY4 203 aaKnown RBP18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 LRRC3BQ96PB8 259 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 OSBPL2Q9H1P3 480 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 COX16Q9P0S2 106 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 WNT6Q9Y6F9 365 aa18.15■□□□□ 0.5
CLSTN3-210ENST00000540931 HOXC11O43248 304 aaPredicted RBP18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 PROSCO94903 275 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 KLKB1P03952 638 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 ADH5P11766 374 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 ADRA1BP35368 520 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 ZXDAP98168 799 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 SIGLEC14Q08ET2 396 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 DHCR24Q15392 516 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 SLC44A4Q53GD3 710 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 SYCE1Q8N0S2 351 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 HJURPQ8NCD3 748 aaPredicted RBP18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 PACSIN1Q9BY11 444 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 EBF3Q9H4W6 596 aa18.14■□□□□ 0.49
CLSTN3-210ENST00000540931 MYO10Q9HD67 2058 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 NCAM2O15394 837 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 ZSCAN12O43309 604 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 MOCS2O96007 188 aaPredicted RBP18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 KRT7P08729 469 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 HDAC4P56524 1084 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 C15orf59Q2T9L4 293 aaPredicted RBP18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 ERMARDQ5T6L9 678 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 TRNP1Q6NT89 227 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 SCYL2Q6P3W7 929 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 ZNF852Q6ZMS4 543 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 FAM131BQ86XD5 332 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 TEKT4Q8WW24 435 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 ARHGEF26Q96DR7 871 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 PHOX2BQ99453 314 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 LINC00597Q9H2U6 94 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 ADGRG1Q9Y653 693 aa18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 KIF26AQ9ULI4 1882 aaPredicted RBP18.13■□□□□ 0.49
CLSTN3-210ENST00000540931 ZDBF2Q9HCK1 2354 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 PAGE1O75459 146 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 NAP1L1P55209 391 aaKnown RBP18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 MLF2Q15773 248 aaPredicted RBP18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 ANO4Q32M45 955 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 MS4A13Q5J8X5 152 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 LY6G5CQ5SRR4 150 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 PIK3R6Q5UE93 754 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 OTUD1Q5VV17 481 aaPredicted RBP18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 RHBDF2Q6PJF5 856 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 POLNQ7Z5Q5 900 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 CHSY1Q86X52 802 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 MAP7D3Q8IWC1 876 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 PRSS33Q8NF86 280 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 DDI1Q8WTU0 396 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 EPAS1Q99814 870 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 BBS2Q9BXC9 721 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 OSBPL6Q9BZF3 934 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 HPS4Q9NQG7 708 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 ARHGEF3Q9NR81 526 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 STIM2Q9P246 746 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 PPARGC1AQ9UBK2 798 aaKnown RBP18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 USP18Q9UMW8 372 aa18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLSTN3-210ENST00000540931 FAM170AA1A519 330 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 LRCH4O75427 683 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 GJB6O95452 261 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 PENKP01210 267 aaPredicted RBP18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 CYP17A1P05093 508 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 TACR2P21452 398 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 L1CAMP32004 1257 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 PITX1P78337 314 aaPredicted RBP18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 CCZ1BP86790 482 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 CCZ1P86791 482 aaPredicted RBP18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 SLC12A1Q13621 1099 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 C5orf22Q49AR2 442 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 IER5LQ5T953 404 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 LRRC38Q5VT99 294 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 C11orf63Q6NUN7 778 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 TRIM67Q6ZTA4 783 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 ZFYVE19Q96K21 471 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 PRDM16Q9HAZ2 1276 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 OR12D3Q9UGF7 316 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 PIAS3Q9Y6X2 628 aa18.11■□□□□ 0.49
CLSTN3-210ENST00000540931 GOLGA6L9A6NEM1 432 aa18.1■□□□□ 0.49
CLSTN3-210ENST00000540931 SPECC1L-ADORA2AF8WAN1 911 aa18.1■□□□□ 0.49
CLSTN3-210ENST00000540931 CACNG3O60359 315 aa18.1■□□□□ 0.49
CLSTN3-210ENST00000540931 CLDN11O75508 207 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms