RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 IMPACTQ9P2X3 320 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 LUC7L2Q9Y383 392 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 FHOD1Q9Y613 1164 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 USP9XQ93008 2570 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 GOLGA8CPA6NN73 597 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 AKR1B15C9JRZ8 316 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 GABRDO14764 452 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 FLRT2O43155 660 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 HOXC11O43248 304 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 NRDCO43847 1150 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 HUS1O60921 280 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 NDUFS2O75306 463 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 STAU1O95793 577 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 OAS1P00973 400 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 KRT5P13647 590 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 APBA1Q02410 837 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 CFHR1Q03591 330 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 CUL2Q13617 745 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 FIGNQ5HY92 759 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 EGFLAMQ63HQ2 1017 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 GJB7Q6PEY0 223 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 CNGA4Q8IV77 575 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 FMNL3Q8IVF7 1028 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 ARHGEF19Q8IW93 802 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 ZCCHC9Q8N567 271 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 TERB1Q8NA31 727 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 LMO3Q8TAP4 145 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 ERLEC1Q96DZ1 483 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 ZFRQ96KR1 1074 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 FCRL3Q96P31 734 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 EDEM3Q9BZQ6 932 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 GANQ9H2C0 597 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 SIX2Q9NPC8 291 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 ZNHIT6Q9NWK9 470 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 TRPM5Q9NZQ8 1165 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 DEC1Q9P2X7 70 aa13.1□□□□□ -0.31
CLSTN3-208ENST00000538933 PLK4O00444 970 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 ATP2C2O75185 946 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 CER1O95813 267 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 CCDC172P0C7W6 258 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 CD58P19256 250 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 CASP14P31944 242 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 KRT9P35527 623 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 STAT1P42224 750 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 MATKP42679 507 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 GSDMDP57764 484 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 GCNT1Q02742 428 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 GAD2Q05329 585 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 DRAP1Q14919 205 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 C10orf76Q5T2E6 689 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 METTL3Q86U44 580 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 SPATA2LQ8IUW3 424 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 TMEM86AQ8N2M4 240 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 TTC39CQ8N584 583 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 FAXDC2Q96IV6 333 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 CEP295NLQ96MC4 621 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 STK33Q9BYT3 514 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 XYLT2Q9H1B5 865 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 NUCKS1Q9H1E3 243 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 VRTNQ9H8Y1 702 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 APOBEC3GQ9HC16 384 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 GDAP2Q9NXN4 497 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 WSB2Q9NYS7 404 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 TBC1D14Q9P2M4 693 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 CAPN11Q9UMQ6 739 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 PCDHB4Q9Y5E5 795 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 NUMA1Q14980 2115 aa13.09□□□□□ -0.31
CLSTN3-208ENST00000538933 TEX51A0A1B0GUA7 166 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 A0A1W2PQJ5 194 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 E2F8A0AVK6 867 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 EPHB6O15197 1021 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 BCAT2O15382 392 aaPredicted RBP13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 ARHGAP6O43182 974 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 TNFSF14O43557 240 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 GYPCP04921 128 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 HLA-EP13747 358 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 CD6P30203 668 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 ZBED6P86452 979 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 SFMBT2Q5VUG0 894 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 IL27RAQ6UWB1 636 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 DHRS13Q6UX07 377 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 DENND5BQ6ZUT9 1274 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 LIMS2Q7Z4I7 341 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 TMEM25Q86YD3 366 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 CADM4Q8NFZ8 388 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 OR6B3Q8NGW1 331 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 OTUB2Q96DC9 234 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 TOE1Q96GM8 510 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 SNX25Q9H3E2 840 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 SMYD3Q9H7B4 428 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 CYP3A43Q9HB55 503 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 RAD54BQ9Y620 910 aa13.08□□□□□ -0.32
CLSTN3-208ENST00000538933 TP53BP1Q12888 1972 aaPredicted RBP13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 COL5A1P20908 1838 aaPredicted RBP13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 LRRC53A6NM62 1247 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 METTL12A8MUP2 240 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 WASH3PC4AMC7 463 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 PRRT4C9JH25 899 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 CAPN9O14815 690 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms