RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 MMP17Q9ULZ9 603 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 CAPN11Q9UMQ6 739 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 KIAA1549LQ6ZVL6 1849 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 ITIH6Q6UXX5 1313 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 CCDC163A0A0D9SF12 145 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 M0QYT0 321 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 ADAM23O75077 832 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 GYPCP04921 128 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 SLC2A3P11169 496 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 HNRNPLP14866 589 aaKnown RBP eCLIP13.46□□□□□ -0.25
VPS28-216ENST00000533806 CCR1P32246 355 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 GBP1P32455 592 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 NSFP46459 744 aaKnown RBP13.46□□□□□ -0.25
VPS28-216ENST00000533806 NRLP54845 237 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 RNASE9P60153 205 aaKnown RBP13.46□□□□□ -0.25
VPS28-216ENST00000533806 C1QBPQ07021 282 aaKnown RBP13.46□□□□□ -0.25
VPS28-216ENST00000533806 DMC1Q14565 340 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 GEN1Q17RS7 908 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 MS4A13Q5J8X5 152 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 PPP1R15BQ5SWA1 713 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 C10orf76Q5T2E6 689 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 SFMBT2Q5VUG0 894 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 TMEM215Q68D42 235 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 ACAD10Q6JQN1 1059 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 CAMKK1Q8N5S9 505 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 ALLCQ8N6M5 410 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.46□□□□□ -0.254e-6■□□□□ 11.3
VPS28-216ENST00000533806 DDI1Q8WTU0 396 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 ACDQ96AP0 544 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 IQCDQ96DY2 449 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 TBCBQ99426 244 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 C11orf70Q9BRQ4 267 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 NUCKS1Q9H1E3 243 aaKnown RBP13.46□□□□□ -0.25
VPS28-216ENST00000533806 FAM204AQ9H8W3 233 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 TMEM51Q9NW97 253 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 ARHGEF38Q9NXL2 777 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 TAS2R14Q9NYV8 317 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 ADAM22Q9P0K1 906 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 R4GN57 208 aa13.46□□□□□ -0.25
VPS28-216ENST00000533806 GPR179Q6PRD1 2367 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 ZNF292O60281 2723 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 C2CD4BA6NLJ0 364 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 GOLGA8SH3BPF8 625 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 SGK1O00141 431 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 DDX3XO00571 662 aaKnown RBP eCLIP13.45□□□□□ -0.266e-7■■□□□ 12.4
VPS28-216ENST00000533806 AP5Z1O43299 807 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 F9P00740 461 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 APOEP02649 317 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 HLA-FP30511 346 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 TIE1P35590 1138 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 RPS24P62847 133 aaKnown RBP13.45□□□□□ -0.26
VPS28-216ENST00000533806 ZBED6P86452 979 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 ENPP2Q13822 863 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 ASIC2Q16515 512 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 CRY1Q16526 586 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 CCDC14Q49A88 953 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 C5orf22Q49AR2 442 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 TMEM92Q6UXU6 159 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 NUDT18Q6ZVK8 323 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 MCOLN2Q8IZK6 566 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 EMC1Q8N766 993 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 RNF214Q8ND24 703 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 C3orf20Q8ND61 904 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 JOSD2Q8TAC2 188 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 FIBINQ8TAL6 211 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 WFDC5Q8TCV5 224 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 CENPIQ92674 756 aaPredicted RBP13.45□□□□□ -0.26
VPS28-216ENST00000533806 VCPIP1Q96JH7 1222 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 DDX50Q9BQ39 737 aaKnown RBP13.45□□□□□ -0.26
VPS28-216ENST00000533806 SEMA4AQ9H3S1 761 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 METTL5Q9NRN9 209 aaKnown RBP13.45□□□□□ -0.26
VPS28-216ENST00000533806 EBF1Q9UH73 591 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 STAP1Q9ULZ2 295 aa13.45□□□□□ -0.26
VPS28-216ENST00000533806 SIGLEC16A6NMB1 481 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 TBL1XO60907 577 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 KLF8O95600 359 aaPredicted RBP13.44□□□□□ -0.26
VPS28-216ENST00000533806 ADCY5O95622 1261 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 MOCS2O96007 188 aaPredicted RBP13.44□□□□□ -0.26
VPS28-216ENST00000533806 CALB1P05937 261 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 GZMAP12544 262 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 ABCB4P21439 1286 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 TACR2P21452 398 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 TNFAIP3P21580 790 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 HNRNPH3P31942 346 aaKnown RBP13.44□□□□□ -0.26
VPS28-216ENST00000533806 RFC1P35251 1148 aaPredicted RBP13.44□□□□□ -0.26
VPS28-216ENST00000533806 FNTBP49356 437 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 ATXN1P54253 815 aaKnown RBP13.44□□□□□ -0.26
VPS28-216ENST00000533806 NME3Q13232 169 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 MTA1Q13330 715 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 ARID5BQ14865 1188 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 BRMS1LQ5PSV4 323 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 EGFLAMQ63HQ2 1017 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 RAP1GAP2Q684P5 730 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 PHLDB2Q86SQ0 1253 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 ADIPOR2Q86V24 386 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 WDR5BQ86VZ2 330 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 LONP2Q86WA8 852 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 RASSF3Q86WH2 238 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 ZNF683Q8IZ20 524 aa13.44□□□□□ -0.26
VPS28-216ENST00000533806 CCDC33Q8N5R6 958 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms