RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 TMTC1Q8IUR5 882 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 LURAP1LQ8IV03 231 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ARHGEF19Q8IW93 802 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 REXO1L1PQ8IX06 675 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 FAM20CQ8IXL6 584 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 LMNTD2Q8IXW0 634 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 THNSL1Q8IYQ7 743 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 MFSD4AQ8N468 514 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 C7orf31Q8N865 590 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ZNF397Q8NF99 534 aaPredicted RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 OR5B17Q8NGF7 314 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 GIMAP7Q8NHV1 300 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 LMO3Q8TAP4 145 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 TAS1R2Q8TE23 839 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 PARD3BQ8TEW8 1205 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 TMEM174Q8WUU8 243 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 DPF3Q92784 378 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 SEMA4DQ92854 862 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 KCNN1Q92952 543 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 KAT5Q92993 513 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 PPP1R13BQ96KQ4 1090 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 CGRRF1Q99675 332 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 MTG1Q9BT17 334 aaPredicted RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 PI4K2AQ9BTU6 479 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 KATNAL1Q9BW62 490 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 JAM3Q9BX67 310 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 C1QTNF1Q9BXJ1 281 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 EDEM3Q9BZQ6 932 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 TMEM117Q9H0C3 514 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 CDT1Q9H211 546 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ADAMTS10Q9H324 1103 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 FZD8Q9H461 694 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 PDZD7Q9H5P4 517 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 CXorf56Q9H5V9 222 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 C7orf69Q9H7B7 122 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 PLCB1Q9NQ66 1216 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 AP5S1Q9NUS5 200 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 KLHL11Q9NVR0 708 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ZNHIT6Q9NWK9 470 aaKnown RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 RBAKQ9NYW8 714 aaPredicted RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 ARHGAP20Q9P2F6 1191 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 PPP2R2CQ9Y2T4 447 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 RAXQ9Y2V3 346 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 TRIM17Q9Y577 477 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 TIMM13Q9Y5L4 95 aaPredicted RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 STYXL1Q9Y6J8 313 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 PRRC2BQ5JSZ5 2229 aaKnown RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 PLXNA3P51805 1871 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 CNTNAP2Q9UHC6 1331 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 HELZP42694 1942 aaKnown RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 SMIM35A0A1B0GVV1 85 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 HMX2A2RU54 273 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 LCHNA4D1U4 455 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 C7orf72A4D263 438 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 KCNK3O14649 394 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 OGTO15294 1046 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 KDM1AO60341 852 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TSPAN1O60635 241 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 GPR32O75388 356 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 OFD1O75665 1012 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TCEA3O75764 348 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 GFPT2O94808 682 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 ERLIN2O94905 339 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 NDUFA10O95299 355 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 VNN1O95497 513 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 HLA-DRAP01903 254 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 ASGR1P07306 291 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 CXCL8P10145 99 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 RHCEP18577 417 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 KRT15P19012 456 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TNNI1P19237 187 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 FSTP19883 344 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 PROZP22891 400 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 CYLC1P35663 651 aaPredicted RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 PIK3CAP42336 1068 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 KIF11P52732 1056 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 PCBP3P57721 371 aaKnown RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 RHDQ02161 417 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 CYP27A1Q02318 531 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 ADCY1Q08828 1119 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 BIRC3Q13489 604 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 LAPTM5Q13571 262 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 DRAP1Q14919 205 aaPredicted RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 SNX17Q15036 470 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 GPR19Q15760 415 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 ASIC2Q16515 512 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TDRD12Q587J7 1177 aaKnown RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 DNTTIP2Q5QJE6 756 aaKnown RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 MAP3K21Q5TCX8 1036 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 KRT39Q6A163 491 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 SPOPLQ6IQ16 392 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 ARHGAP36Q6ZRI8 547 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 CATSPER4Q7RTX7 472 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 SRGAP1Q7Z6B7 1085 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 ZNF410Q86VK4 478 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TSPYL5Q86VY4 417 aaPredicted RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 PTRH1Q86Y79 214 aaKnown RBP4.42□□□□□ -1.7
CD44-226ENST00000527889 BRSK2Q8IWQ3 736 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 EFCAB13Q8IY85 973 aa4.42□□□□□ -1.7
CD44-226ENST00000527889 TEX19Q8NA77 164 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms