RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RTL10Q7L3V2 364 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 TNS4Q8IZW8 715 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 ATP6V0D2Q8N8Y2 350 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 HNRNPLLQ8WVV9 542 aaKnown RBP21.73■■□□□ 1.07
VPS28-208ENST00000527797 DPH5Q9H2P9 285 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 HBS1LQ9Y450 684 aaKnown RBP21.73■■□□□ 1.07
VPS28-208ENST00000527797 GREB1Q4ZG55 1949 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 LRIG2O94898 1065 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 HMBSP08397 361 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 RBP3P10745 1247 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 HTR7P34969 479 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 CARSP49589 748 aaKnown RBP21.73■■□□□ 1.07
VPS28-208ENST00000527797 DRG2P55039 364 aaKnown RBP21.73■■□□□ 1.07
VPS28-208ENST00000527797 MTA1Q13330 715 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 KCTD19Q17RG1 926 aaPredicted RBP21.73■■□□□ 1.07
VPS28-208ENST00000527797 PPM1LQ5SGD2 360 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 BZW1Q7L1Q6 419 aaKnown RBP21.73■■□□□ 1.07
VPS28-208ENST00000527797 ALLCQ8N6M5 410 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 EIF1ADQ8N9N8 165 aaKnown RBP21.73■■□□□ 1.07
VPS28-208ENST00000527797 C1orf74Q96LT6 269 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 TMEM121Q9BTD3 319 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 NKX2-4Q9H2Z4 354 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 ZNF334Q9HCZ1 680 aaPredicted RBP21.73■■□□□ 1.07
VPS28-208ENST00000527797 ETNK2Q9NVF9 386 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 H7C0C1 242 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 COCHO43405 550 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 CLASP2O75122 1294 aaKnown RBP21.72■■□□□ 1.07
VPS28-208ENST00000527797 IGLV3-27P01718 113 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 KRT14P02533 472 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 F11P03951 625 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 ERCC2P18074 760 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 ATP5OP48047 213 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 TRADDQ15628 312 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 DARS2Q6PI48 645 aaKnown RBP21.72■■□□□ 1.07
VPS28-208ENST00000527797 TMCO3Q6UWJ1 677 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 ZC3H18Q86VM9 953 aaKnown RBP21.72■■□□□ 1.07
VPS28-208ENST00000527797 DDX42Q86XP3 938 aaKnown RBP eCLIP21.72■■□□□ 1.07
VPS28-208ENST00000527797 BTN2A3PQ96KV6 586 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 ARFGAP3Q9NP61 516 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 SNX24Q9Y343 169 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 HS3ST4Q9Y661 456 aa21.72■■□□□ 1.07
VPS28-208ENST00000527797 SGK1O00141 431 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 DCLK1O15075 740 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 SRGAP2BP0DMP2 458 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 MYBL2P10244 700 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 EPHB2P29323 1055 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 GGCXP38435 758 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 MLLT6P55198 1093 aaPredicted RBP21.71■■□□□ 1.07
VPS28-208ENST00000527797 NRG1Q02297 640 aaPredicted RBP21.71■■□□□ 1.07
VPS28-208ENST00000527797 GBE1Q04446 702 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 XRCC4Q13426 336 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 PAFAH1B3Q15102 231 aaKnown RBP21.71■■□□□ 1.07
VPS28-208ENST00000527797 NUGGCQ68CJ6 796 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 PDZD4Q76G19 769 aaPredicted RBP21.71■■□□□ 1.07
VPS28-208ENST00000527797 TMEM150AQ86TG1 271 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 UNC45BQ8IWX7 931 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 CCDC89Q8N998 374 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 CCHCR1Q8TD31 782 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 RSAD2Q8WXG1 361 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.71■■□□□ 1.07
VPS28-208ENST00000527797 CERS4Q9HA82 394 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 IL21Q9HBE4 155 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 ASIC3Q9UHC3 531 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 XPO7Q9UIA9 1087 aaKnown RBP21.71■■□□□ 1.07
VPS28-208ENST00000527797 NFU1Q9UMS0 254 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 NEU2Q9Y3R4 380 aa21.71■■□□□ 1.07
VPS28-208ENST00000527797 H0YGN5 161 aa21.7■■□□□ 1.06
VPS28-208ENST00000527797 OAS1P00973 400 aaKnown RBP21.7■■□□□ 1.06
VPS28-208ENST00000527797 STIP1P31948 543 aaKnown RBP21.7■■□□□ 1.06
VPS28-208ENST00000527797 COG7P83436 770 aa21.7■■□□□ 1.06
VPS28-208ENST00000527797 HLTFQ14527 1009 aaKnown RBP eCLIP21.7■■□□□ 1.06
VPS28-208ENST00000527797 TRIP13Q15645 432 aaPredicted RBP21.7■■□□□ 1.06
VPS28-208ENST00000527797 ACBD5Q5T8D3 534 aaPredicted RBP21.7■■□□□ 1.06
VPS28-208ENST00000527797 RWDD4Q6NW29 188 aaKnown RBP21.7■■□□□ 1.06
VPS28-208ENST00000527797 GSPT2Q8IYD1 628 aaKnown RBP21.7■■□□□ 1.06
VPS28-208ENST00000527797 MFHAS1Q9Y4C4 1052 aa21.7■■□□□ 1.06
VPS28-208ENST00000527797 C2orf78A6NCI8 922 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 GABRR2P28476 465 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 SLC10A2Q12908 348 aaPredicted RBP21.69■■□□□ 1.06
VPS28-208ENST00000527797 PPP2R2DQ66LE6 453 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 SLC22A17Q8WUG5 538 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 TBC1D31Q96DN5 1066 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 C10orf88Q9H8K7 445 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 MAN1C1Q9NR34 630 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 DTLQ9NZJ0 730 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 ZNF638Q14966 1978 aaKnown RBP21.69■■□□□ 1.06
VPS28-208ENST00000527797 CFAP69A5D8W1 941 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 CCL16O15467 120 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 ADCY8P40145 1251 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 RPL21P46778 160 aaKnown RBP21.69■■□□□ 1.06
VPS28-208ENST00000527797 MS4A13Q5J8X5 152 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 PIK3R6Q5UE93 754 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 MANEALQ5VSG8 457 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 CDKL3Q8IVW4 592 aaPredicted RBP21.69■■□□□ 1.06
VPS28-208ENST00000527797 HS6ST3Q8IZP7 471 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 PLD4Q96BZ4 506 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 LRRC3Q9BY71 257 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 LMAN2LQ9H0V9 348 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 CATSPERBQ9H7T0 1116 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 SLC28A3Q9HAS3 691 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms