RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PLXNB2O15031 1838 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.87■■□□□ 1.09
VPS28-205ENST00000526204 C2orf71A6NGG8 1288 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 BTBD19C9JJ37 291 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 RNF103O00237 685 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 CYB561D2O14569 222 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 F2P00734 622 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 RARBP10826 455 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 PGAM1P18669 254 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 WARSP23381 471 aaKnown RBP21.87■■□□□ 1.09
VPS28-205ENST00000526204 NIPAL4Q0D2K0 466 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 NAA25Q14CX7 972 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 DCAF6Q58WW2 860 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 TOP6BLQ8N6T0 577 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 PDCD7Q8N8D1 485 aaKnown RBP21.87■■□□□ 1.09
VPS28-205ENST00000526204 RNF139Q8WU17 664 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 P2RY11Q96G91 374 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 STAP1Q9ULZ2 295 aa21.87■■□□□ 1.09
VPS28-205ENST00000526204 PPP1R12AO14974 1030 aaPredicted RBP21.86■■□□□ 1.09
VPS28-205ENST00000526204 MFSD11O43934 449 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 GTF2A2P52657 109 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 ADIGQ0VDE8 80 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 TAF11Q15544 211 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 TBCCQ15814 346 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 ZNF618Q5T7W0 954 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 TTC8Q8TAM2 541 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 PRR11Q96HE9 360 aaPredicted RBP21.86■■□□□ 1.09
VPS28-205ENST00000526204 RNF19AQ9NV58 838 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 KLK14Q9P0G3 267 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 TKTP29401 623 aaKnown RBP21.86■■□□□ 1.09
VPS28-205ENST00000526204 AP1B1Q10567 949 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 WASHC5Q12768 1159 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 RINLQ6ZS11 566 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 BNIPLQ7Z465 357 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 TTC7BQ86TV6 843 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 ALYREFQ86V81 257 aaKnown RBP21.86■■□□□ 1.09
VPS28-205ENST00000526204 KCNV2Q8TDN2 545 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 KCTD13Q8WZ19 329 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 MS4A4AQ96JQ5 239 aa21.86■■□□□ 1.09
VPS28-205ENST00000526204 CAPN14A8MX76 684 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 GLRA3O75311 464 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 FAM163BP0C2L3 166 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 SNX17Q15036 470 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 TEX9Q8N6V9 391 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 NAF1Q96HR8 494 aaKnown RBP21.85■■□□□ 1.09
VPS28-205ENST00000526204 NPY6RQ99463 290 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 STOML1Q9UBI4 398 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 DCDC2Q9UHG0 476 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 HBS1LQ9Y450 684 aaKnown RBP21.85■■□□□ 1.09
VPS28-205ENST00000526204 TRIP11Q15643 1979 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 CCL15-CCL14A0A0B4J2E2 113 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 CCDC195A0A1B0GUA6 201 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 DYNC1LI2O43237 492 aaPredicted RBP21.85■■□□□ 1.09
VPS28-205ENST00000526204 NPR3P17342 541 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 AQP5P55064 265 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 LILRA4P59901 499 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 PAFAH1B3Q15102 231 aaKnown RBP21.85■■□□□ 1.09
VPS28-205ENST00000526204 CCL15Q16663 113 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 CMPK2Q5EBM0 449 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 C9orf131Q5VYM1 1079 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 CES4AQ5XG92 561 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 RFWD3Q6PCD5 774 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 PACS1Q6VY07 963 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 PAXIP1Q6ZW49 1069 aaPredicted RBP21.85■■□□□ 1.09
VPS28-205ENST00000526204 PLEKHH3Q7Z736 793 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 ANKRD23Q86SG2 305 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 TMPRSS6Q8IU80 811 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 PPP1R14CQ8TAE6 165 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 ARNTL2Q8WYA1 636 aa21.85■■□□□ 1.09
VPS28-205ENST00000526204 PPARGC1AQ9UBK2 798 aaKnown RBP21.85■■□□□ 1.09
VPS28-205ENST00000526204 GCKP35557 465 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 HSF5Q4G112 596 aaPredicted RBP21.84■■□□□ 1.09
VPS28-205ENST00000526204 KHDC1Q4VXA5 237 aaKnown RBP21.84■■□□□ 1.09
VPS28-205ENST00000526204 DSTYKQ6XUX3 929 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 CCNYQ8ND76 341 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 DNAJB3Q8WWF6 145 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 LRRC4Q9HBW1 653 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 ARMCX1Q9P291 453 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 IGSF9Q9P2J2 1179 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 SORCS3Q9UPU3 1222 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 NR2E3Q9Y5X4 410 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 KAT6AQ92794 2004 aa21.84■■□□□ 1.09
VPS28-205ENST00000526204 M0QYT0 321 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 ADCY6O43306 1168 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 MGAT1P26572 445 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 PTDSS1P48651 473 aaKnown RBP21.83■■□□□ 1.09
VPS28-205ENST00000526204 AIF1P55008 147 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 SESN2P58004 480 aaPredicted RBP21.83■■□□□ 1.09
VPS28-205ENST00000526204 SOX4Q06945 474 aaPredicted RBP21.83■■□□□ 1.09
VPS28-205ENST00000526204 FASTKD1Q53R41 847 aaKnown RBP21.83■■□□□ 1.09
VPS28-205ENST00000526204 PDZD4Q76G19 769 aaPredicted RBP21.83■■□□□ 1.09
VPS28-205ENST00000526204 SIX6OS1Q8N1H7 587 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 WNT8BQ93098 351 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 SLC2A13Q96QE2 648 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 SLC9A7Q96T83 725 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 RNF39Q9H2S5 420 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 XPNPEP3Q9NQH7 507 aa21.83■■□□□ 1.09
VPS28-205ENST00000526204 H0Y3Z8 333 aa21.83■■□□□ 1.08
VPS28-205ENST00000526204 ALDOAP04075 364 aaKnown RBP21.83■■□□□ 1.08
VPS28-205ENST00000526204 POLBP06746 335 aa21.83■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms