RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	ANAPC7	Q9UJX3	599 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025		A0A0A6YYK5	440 aa	Predicted RBP	21.5	■■□□□ 1.03
CD44-222	ENST00000526025	KRBA1	A5PL33	1030 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	MYO1F	O00160	1098 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	NRDC	O43847	1150 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	RNF8	O76064	485 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	MOCS2	O96007	188 aa	Predicted RBP	21.5	■■□□□ 1.03
CD44-222	ENST00000526025	PCK1	P35558	622 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	HADHB	P55084	474 aa	Known RBP	21.5	■■□□□ 1.03
CD44-222	ENST00000526025	KRT83	P78385	493 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	GAB4	Q2WGN9	574 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	MPPE1	Q53F39	396 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	SH3PXD2A	Q5TCZ1	1133 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	TMEM25	Q86YD3	366 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	SUGP1	Q8IWZ8	645 aa	Known RBP	21.5	■■□□□ 1.03
CD44-222	ENST00000526025	CALR3	Q96L12	384 aa	Known RBP	21.5	■■□□□ 1.03
CD44-222	ENST00000526025	PRMT1	Q99873	361 aa	Known RBP	21.5	■■□□□ 1.03
CD44-222	ENST00000526025	TRIM7	Q9C029	511 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	CA14	Q9ULX7	337 aa		21.5	■■□□□ 1.03
CD44-222	ENST00000526025	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	21.49	■■□□□ 1.03
CD44-222	ENST00000526025	CACNG3	O60359	315 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	PAGE1	O75459	146 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	ADRA1B	P35368	520 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	ATXN1	P54253	815 aa	Known RBP	21.49	■■□□□ 1.03
CD44-222	ENST00000526025	NRG1	Q02297	640 aa	Predicted RBP	21.49	■■□□□ 1.03
CD44-222	ENST00000526025	C5orf22	Q49AR2	442 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	MS4A13	Q5J8X5	152 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	IER5L	Q5T953	404 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	PIK3R6	Q5UE93	754 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	TTC39B	Q5VTQ0	682 aa	Predicted RBP	21.49	■■□□□ 1.03
CD44-222	ENST00000526025	FYB2	Q5VWT5	728 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	ZNF852	Q6ZMS4	543 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	TPRG1	Q6ZUI0	275 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	FAM131B	Q86XD5	332 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	ETFBKMT	Q8IXQ9	262 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	SIX5	Q8N196	739 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	ZNF557	Q8N988	423 aa	Predicted RBP	21.49	■■□□□ 1.03
CD44-222	ENST00000526025	SLC35G2	Q8TBE7	412 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	CHFR	Q96EP1	664 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	NELL2	Q99435	816 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	BBS2	Q9BXC9	721 aa		21.49	■■□□□ 1.03
CD44-222	ENST00000526025	XPO7	Q9UIA9	1087 aa	Known RBP	21.49	■■□□□ 1.03
CD44-222	ENST00000526025	MRPS17	Q9Y2R5	130 aa	Known RBP	21.49	■■□□□ 1.03
CD44-222	ENST00000526025	TYW5	A2RUC4	315 aa	Known RBP	21.48	■■□□□ 1.03
CD44-222	ENST00000526025	SHISA7	A6NL88	538 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	BTNL10	A8MVZ5	291 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025		F5H5T6	163 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025		I6L893	689 aa	Predicted RBP	21.48	■■□□□ 1.03
CD44-222	ENST00000526025	TRDMT1	O14717	391 aa	Known RBP	21.48	■■□□□ 1.03
CD44-222	ENST00000526025	TACR2	P21452	398 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	SLC6A4	P31645	630 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	MAN1A1	P33908	653 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	ARHGAP25	P42331	645 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	VAV2	P52735	878 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	PREPL	Q4J6C6	727 aa	Predicted RBP	21.48	■■□□□ 1.03
CD44-222	ENST00000526025	CHSY1	Q86X52	802 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	PSTK	Q8IV42	348 aa	Known RBP	21.48	■■□□□ 1.03
CD44-222	ENST00000526025	HJURP	Q8NCD3	748 aa	Predicted RBP	21.48	■■□□□ 1.03
CD44-222	ENST00000526025	TMA16	Q96EY4	203 aa	Known RBP	21.48	■■□□□ 1.03
CD44-222	ENST00000526025	XPO6	Q96QU8	1125 aa	Known RBP	21.48	■■□□□ 1.03
CD44-222	ENST00000526025	SLC2A11	Q9BYW1	496 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	OSBPL6	Q9BZF3	934 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	OSBPL2	Q9H1P3	480 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	ANLN	Q9NQW6	1124 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	REXO2	Q9Y3B8	237 aa	Known RBP	21.48	■■□□□ 1.03
CD44-222	ENST00000526025	HS3ST4	Q9Y661	456 aa		21.48	■■□□□ 1.03
CD44-222	ENST00000526025	TMEM221	A6NGB7	291 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025		M0R296	226 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	PJA2	O43164	708 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	LRCH4	O75427	683 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	TYR	P14679	529 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	OPRD1	P41143	372 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	SOX9	P48436	509 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	VCP	P55072	806 aa	Known RBP	21.47	■■□□□ 1.03
CD44-222	ENST00000526025	ANO4	Q32M45	955 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	RAB6C	Q53S08	254 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	TPGS1	Q6ZTW0	290 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	BMP8A	Q7Z5Y6	402 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	RAB6C	Q9H0N0	254 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	FBXO10	Q9UK96	956 aa		21.47	■■□□□ 1.03
CD44-222	ENST00000526025	GOLGA6L7	A0A1B0GV03	622 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	KANSL1L	A0AUZ9	987 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	NEDD8-MDP1	E9PL57	170 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	PROSC	O94903	275 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	HOXD9	P28356	352 aa	Predicted RBP	21.46	■■□□□ 1.03
CD44-222	ENST00000526025	CCZ1B	P86790	482 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	CCZ1	P86791	482 aa	Predicted RBP	21.46	■■□□□ 1.03
CD44-222	ENST00000526025	AUH	Q13825	339 aa	Known RBP	21.46	■■□□□ 1.03
CD44-222	ENST00000526025	RABGAP1L	Q5R372	815 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	RAP1GAP2	Q684P5	730 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	RFWD3	Q6PCD5	774 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	SLFN11	Q7Z7L1	901 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	ARFGAP1	Q8N6T3	406 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	CCDC185	Q8N715	623 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	ACRBP	Q8NEB7	543 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	TTC8	Q8TAM2	541 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	DDI1	Q8WTU0	396 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	FAM3C	Q92520	227 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	CD101	Q93033	1021 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	PRICKLE1	Q96MT3	831 aa	Predicted RBP	21.46	■■□□□ 1.03

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms