RNA–Protein interactions for RNA: ENST00000521559.1

VPS13B-209, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 466 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-209ENST00000521559 MEIS3Q99687 375 aa3.79□□□□□ -1.8
VPS13B-209ENST00000521559 THAP7Q9BT49 309 aaPredicted RBP3.79□□□□□ -1.8
VPS13B-209ENST00000521559 DDX19BQ9UMR2 479 aa3.79□□□□□ -1.8
VPS13B-209ENST00000521559 L1RE1Q9UN81 338 aa3.79□□□□□ -1.8
VPS13B-209ENST00000521559 C10orf71Q711Q0 1435 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 COL5A3P25940 1745 aaPredicted RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ABCC12Q96J65 1359 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 LOC102723971A0A1B0GUV8 181 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ANKRD18BA2A2Z9 1011 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 TSPAN6O43657 245 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 RGS10O43665 173 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 RASSF9O75901 435 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 INMTO95050 263 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 BRAFP15056 766 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 KLRC1P26715 233 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 CTGFP29279 349 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 MPGP29372 298 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 GKP32189 559 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 PLCD1P51178 756 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 BCAT1P54687 386 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 SUMO3P55854 103 aaPredicted RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 RPS8P62241 208 aaKnown RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 E2F1Q01094 437 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 GRAPQ13588 217 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 MLC1Q15049 377 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 LRRC41Q15345 812 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 CNN3Q15417 329 aaKnown RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ZIK1Q3SY52 487 aaPredicted RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 RABL6Q3YEC7 729 aaPredicted RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ARHGAP29Q52LW3 1261 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 DCAF12L1Q5VU92 463 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ZNF626Q68DY1 528 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ZNF425Q6IV72 752 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 MIS18BP1Q6P0N0 1132 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 KIRREL2Q6UWL6 708 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 SRGAP1Q7Z6B7 1085 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 CHSY1Q86X52 802 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 WDR75Q8IWA0 830 aaKnown RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 TCEAL8Q8IYN2 117 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 MYO1HQ8N1T3 1032 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 GALNT16Q8N428 558 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ANKRD44Q8N8A2 993 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 GRAPLQ8TC17 118 aaPredicted RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ADAMTS18Q8TE60 1221 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 DENND1AQ8TEH3 1009 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 IPCEF1Q8WWN9 437 aaPredicted RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 NMD3Q96D46 503 aaKnown RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ZNF778Q96MU6 729 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 C17orf80Q9BSJ5 609 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 TRIM5Q9C035 493 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 CIPCQ9C0C6 399 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 LRRC27Q9C0I9 530 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ZCWPW1Q9H0M4 648 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 BICC1Q9H694 974 aaKnown RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 SMURF2Q9HAU4 748 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ATP6V0A4Q9HBG4 840 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 GBA2Q9HCG7 927 aaPredicted RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 TRIM36Q9NQ86 728 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 SACM1LQ9NTJ5 587 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 ZBTB40Q9NUA8 1239 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 SNX14Q9Y5W7 946 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 LRRFIP2Q9Y608 721 aaKnown RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 CDY1Q9Y6F8 540 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 KAT6BQ8WYB5 2073 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 PXDNLA1KZ92 1463 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 MYH14Q7Z406 1995 aaKnown RBP3.78□□□□□ -1.8
VPS13B-209ENST00000521559 RIC1Q4ADV7 1423 aa3.78□□□□□ -1.8
VPS13B-209ENST00000521559 RTL9Q8NET4 1388 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 LAMB4A4D0S4 1761 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 TRIM43BA6NCK2 446 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 BTBD19C9JJ37 291 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 PYCARD-AS1I3L0S3 204 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 AP4M1O00189 453 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 CES2O00748 559 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 ADAMTS3O15072 1205 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 TBX3O15119 743 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 PDE8BO95263 885 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 RASAL1O95294 804 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 ERBB2P04626 1255 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 CD19P15391 556 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 ZKSCAN1P17029 563 aaPredicted RBP3.77□□□□□ -1.81
VPS13B-209ENST00000521559 MMP13P45452 471 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 RFX5P48382 616 aaPredicted RBP3.77□□□□□ -1.81
VPS13B-209ENST00000521559 HNRNPA0Q13151 305 aaKnown RBP3.77□□□□□ -1.81
VPS13B-209ENST00000521559 IFIT5Q13325 482 aaKnown RBP3.77□□□□□ -1.81
VPS13B-209ENST00000521559 MTX1Q13505 466 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 CNGA2Q16280 664 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 CCDC57Q2TAC2 916 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 GFOD2Q3B7J2 385 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 CEP78Q5JTW2 689 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 CACHD1Q5VU97 1274 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 DARS2Q6PI48 645 aaKnown RBP3.77□□□□□ -1.81
VPS13B-209ENST00000521559 ZNF66Q6ZN08 573 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 ANKRD18AQ8IVF6 992 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 RPAP2Q8IXW5 612 aaPredicted RBP3.77□□□□□ -1.81
VPS13B-209ENST00000521559 MAGEB6Q8N7X4 407 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 TMEM171Q8WVE6 324 aa3.77□□□□□ -1.81
VPS13B-209ENST00000521559 CELF1Q92879 486 aaKnown RBP3.77□□□□□ -1.81
VPS13B-209ENST00000521559 TRIM43Q96BQ3 446 aaPredicted RBP3.77□□□□□ -1.81
VPS13B-209ENST00000521559 ZNF668Q96K58 619 aaPredicted RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms