RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 SPDYAQ5MJ70 313 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 TMC7Q7Z402 723 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 ZNF554Q86TJ5 538 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 CHSY1Q86X52 802 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 RELL1Q8IUW5 271 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 SPATA33Q96N06 139 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 NGRNQ9NPE2 291 aaKnown RBP9.92□□□□□ -0.82
VCAN-210ENST00000513960 SEPT10Q9P0V9 454 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 ARHGAP26Q9UNA1 814 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 SNCAIPQ9Y6H5 919 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 TNFAIP8O95379 198 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 ITGAVP06756 1048 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 TFPTP0C1Z6 253 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 FUT4P22083 530 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 EDNRBP24530 442 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 CRADDP78560 199 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 ATP1A4Q13733 1029 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 ITGA9Q13797 1035 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 HSDL1Q3SXM5 330 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 RBM12BQ8IXT5 1001 aaKnown RBP9.92□□□□□ -0.82
VCAN-210ENST00000513960 ADAM32Q8TC27 787 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 CNKSR2Q8WXI2 1034 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 MARK4Q96L34 752 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 DRG1Q9Y295 367 aaKnown RBP9.92□□□□□ -0.82
VCAN-210ENST00000513960 ACKR2O00590 384 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 XPOTO43592 962 aaKnown RBP9.92□□□□□ -0.82
VCAN-210ENST00000513960 TRMUO75648 421 aaKnown RBP9.92□□□□□ -0.82
VCAN-210ENST00000513960 PGK2P07205 417 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 KRT7P08729 469 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 RFC1P35251 1148 aaPredicted RBP9.92□□□□□ -0.82
VCAN-210ENST00000513960 GMPRP36959 345 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 ABCG1P45844 678 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 OGDHQ02218 1023 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 CCNIQ14094 377 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 SEPT6Q14141 434 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 KCTD2Q14681 263 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 MYLK3Q32MK0 819 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 ITPRIPL1Q6GPH6 555 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 AAGABQ6PD74 315 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 DRICH1Q6PGQ1 229 aaPredicted RBP9.92□□□□□ -0.82
VCAN-210ENST00000513960 ZFP28Q8NHY6 868 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 PIWIL2Q8TC59 973 aaKnown RBP9.92□□□□□ -0.82
VCAN-210ENST00000513960 TFAP2BQ92481 460 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 JADE3Q92613 823 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 HAPLN3Q96S86 360 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 CDRT15Q96T59 188 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 SERPINI1Q99574 410 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 PFDN4Q9NQP4 134 aa9.92□□□□□ -0.82
VCAN-210ENST00000513960 DDX43Q9NXZ2 648 aaKnown RBP9.92□□□□□ -0.82
VCAN-210ENST00000513960 SIN3BO75182 1162 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 F7P08709 466 aaPredicted RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 MX2P20592 715 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 TYK2P29597 1187 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 CDKN2BP42772 138 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 C16orf87Q6PH81 154 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 HACE1Q8IYU2 909 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 PQLC1Q8N2U9 271 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 UBR7Q8N806 425 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 OTUD5Q96G74 571 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 NUF2Q9BZD4 464 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 KLC2Q9H0B6 622 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.91□□□□□ -0.82
VCAN-210ENST00000513960 THAP1Q9NVV9 213 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 RGS17Q9UGC6 210 aaPredicted RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 ZNF180Q9UJW8 692 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 PCDHGC3Q9UN70 934 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 GNEQ9Y223 722 aaKnown RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 GIPC1O14908 333 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 CSDE1O75534 798 aaKnown RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 PENKP01210 267 aaPredicted RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 PSMC3P17980 439 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 NAA20P61599 178 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 ZNF252P-AS1Q0IIN9 211 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 LPIN1Q14693 890 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 TBCCQ15814 346 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 DENND1BQ6P3S1 775 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 TRMT10BQ6PF06 316 aaKnown RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 SULF1Q8IWU6 871 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 FAM156AQ8NDB6 213 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 TRAPPC12Q8WVT3 735 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 THAP11Q96EK4 314 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 GPR20Q99678 358 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 CCDC28BQ9BUN5 200 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 PAIP1Q9H074 479 aaKnown RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 SSU72Q9NP77 194 aaKnown RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 C20orf96Q9NUD7 363 aaPredicted RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 POLIQ9UNA4 740 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 RLFQ13129 1914 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 PARP14Q460N5 1801 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 CCDC78A2IDD5 438 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 BUD23O43709 281 aaKnown RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 CRTAMO95727 393 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 HOXC6P09630 235 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 SOX11P35716 441 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 RAP1GAPP47736 663 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 IGBP1P78318 339 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 PABPC1LQ4VXU2 614 aaKnown RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 EFCAB12Q6NXP0 572 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 PATL1Q86TB9 770 aaKnown RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 SNX32Q86XE0 403 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms