RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 RFC5P40937 340 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 HARS2P49590 506 aaKnown RBP3.66□□□□□ -1.82
USP53-205ENST00000509769 ALDH3A2P51648 485 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 GPC5P78333 572 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 TAGLNQ01995 201 aaKnown RBP3.66□□□□□ -1.82
USP53-205ENST00000509769 PRKCEQ02156 737 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 FOLH1Q04609 750 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 FADDQ13158 208 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 MAB21L1Q13394 359 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 CUL2Q13617 745 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 COL19A1Q14993 1142 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 PDK3Q15120 406 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 SLC5A9Q2M3M2 681 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 HKDC1Q2TB90 917 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 ZNF829Q3KNS6 432 aaPredicted RBP3.66□□□□□ -1.82
USP53-205ENST00000509769 MTX3Q5HYI7 312 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 DARS2Q6PI48 645 aaKnown RBP3.66□□□□□ -1.82
USP53-205ENST00000509769 HAGHLQ6PII5 290 aaPredicted RBP3.66□□□□□ -1.82
USP53-205ENST00000509769 CORO6Q6QEF8 472 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 BAIAP2L2Q6UXY1 529 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 NYAP1Q6ZVC0 841 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 NT5DC3Q86UY8 548 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 ZNF283Q8N7M2 679 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 ASCC1Q8N9N2 400 aaKnown RBP3.66□□□□□ -1.82
USP53-205ENST00000509769 KYQ8NBH2 561 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 OR8H1Q8NGG4 311 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 COQ8AQ8NI60 647 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 STOML3Q8TAV4 291 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 MRRFQ96E11 262 aaKnown RBP3.66□□□□□ -1.82
USP53-205ENST00000509769 ZBED3Q96IU2 234 aaPredicted RBP3.66□□□□□ -1.82
USP53-205ENST00000509769 PGBD1Q96JS3 809 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 VPS35Q96QK1 796 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 PBDC1Q9BVG4 233 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 IRF2BPLQ9H1B7 796 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 HMGXB4Q9UGU5 601 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 IP6K2Q9UHH9 426 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 UBQLN1Q9UMX0 589 aaKnown RBP3.66□□□□□ -1.82
USP53-205ENST00000509769 ERVK-11Q9UQG0 969 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 MTMR6Q9Y217 621 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 ROBO2Q9HCK4 1378 aa3.66□□□□□ -1.82
USP53-205ENST00000509769 NHSQ6T4R5 1651 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 UBA6A0AVT1 1052 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 FAM220BPB1ANY3 271 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 STX16-NPEPL1H3BU86 382 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 PLOD2O00469 737 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 SLC22A2O15244 555 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 GATBO75879 557 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 SUPT7LO94864 414 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 CAMTA2O94983 1202 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 STARD3NLO95772 234 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ANXA5P08758 320 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ADRA2BP18089 450 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 S100PP25815 95 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 VEGFBP49765 207 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ARFIP1P53367 373 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 SNRPFP62306 86 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 MYL7Q01449 175 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 NFIAQ12857 509 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 NAE1Q13564 534 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 PTGR1Q14914 329 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 TOMM20Q15388 145 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 HMGN3Q15651 99 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 TAF12Q16514 161 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 MOGQ16653 247 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 SMU1Q2TAY7 513 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ARSHQ5FYA8 562 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 RBM48Q5RL73 367 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 SLC25A25Q6KCM7 469 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 TIGD7Q6NT04 549 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 SLC25A24Q6NUK1 477 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 SCYL2Q6P3W7 929 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 TMEM26Q6ZUK4 368 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 DENND5BQ6ZUT9 1274 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 RHOUQ7L0Q8 258 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 CXXC5Q7LFL8 322 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 PLEKHM2Q8IWE5 1019 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ZBTB8OSQ8IWT0 167 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ZSCAN29Q8IWY8 852 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 MIER2Q8N344 545 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 MEIOBQ8N635 442 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 C12orf50Q8NA57 414 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 ATG16L2Q8NAA4 619 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 OR6Y1Q8NGX8 325 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 C9orf43Q8TAL5 461 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 FBXO30Q8TB52 745 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 GPT2Q8TD30 523 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 RFFLQ8WZ73 363 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 KAT2BQ92831 832 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ZHX1-C8orf76Q96EF9 292 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ZDHHC12Q96GR4 267 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 BIRC8Q96P09 236 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 RPRD1AQ96P16 312 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 ECSITQ9BQ95 431 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 C17orf80Q9BSJ5 609 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 SHCBP1LQ9BZQ2 653 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 EPB41L4BQ9H329 900 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 PABPC3Q9H361 631 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 BOLA2Q9H3K6 86 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ABCB10Q9NRK6 738 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ABHD10Q9NUJ1 306 aa3.65□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms