RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SLC2A12Q8TD20 617 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 ASB12Q8WXK4 309 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 HERVK_113Q902F9 699 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 AKAP1Q92667 903 aaKnown RBP eCLIP4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 KAZALD1Q96I82 304 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 CCDC17Q96LX7 622 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 UROC1Q96N76 676 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 PIGSQ96S52 555 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 EIF2AK1Q9BQI3 630 aaKnown RBP4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 RNF26Q9BY78 433 aaPredicted RBP4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 CPNE5Q9HCH3 593 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 ALG13Q9NP73 1137 aaKnown RBP4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 TLK1Q9UKI8 766 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 LZTS1Q9Y250 596 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 SPATA31A1Q5TZJ5 1347 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 A0A1B0GVC2 190 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 H3BNC9 293 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 HNRNPRO43390 633 aaKnown RBP4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 GCATO75600 419 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 WDHD1O75717 1129 aaPredicted RBP4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 HEXIM1O94992 359 aaKnown RBP4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 ALDOAP04075 364 aaKnown RBP4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 ATF7P17544 494 aaPredicted RBP4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 RCAN1P53805 252 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 WDR5P61964 334 aaKnown RBP4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 ZXDAP98168 799 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 UBE3AQ05086 875 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 KCNB1Q14721 858 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 ANKRD1Q15327 319 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 CTXN3Q4LDR2 81 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 OLFML1Q6UWY5 402 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 VSTM1Q6UX27 236 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 SERPINA13PQ6UXR4 307 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 DCDC5Q6ZRR9 648 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 GGNQ86UU5 652 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 LDLRAD3Q86YD5 345 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 IL17REQ8NFR9 667 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 ADAMTS18Q8TE60 1221 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 KTI12Q96EK9 354 aaPredicted RBP4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 FYTTD1Q96QD9 318 aaKnown RBP4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 UBA5Q9GZZ9 404 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 ASIC5Q9NY37 505 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 GGA3Q9NZ52 723 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 SH3BP4Q9P0V3 963 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 SEMA5BQ9P283 1151 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 PI4KBQ9UBF8 816 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 ADAM21Q9UKJ8 722 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 CRYL1Q9Y2S2 319 aa4.56□□□□□ -1.68
HMGB1P28-201ENST00000507778 CYP3A7-CYP3A51PA0A087WV96 503 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 SAC3D1A6NKF1 404 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 C3orf70A6NLC5 250 aaPredicted RBP4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 TARM1B6A8C7 271 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 BTBD19C9JJ37 291 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 H7C1Q1 480 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 CNPP09543 421 aaKnown RBP4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 CHN1P15882 459 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 XBP1P17861 261 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 CD53P19397 219 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 GPD1P21695 349 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 PROZP22891 400 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 CYP3A7P24462 503 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 SLC8A1P32418 973 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 ACVRL1P37023 503 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 GDF5P43026 501 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 INHBCP55103 352 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 TLE2Q04725 743 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 DPTQ07507 201 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 TBX2Q13207 712 aaPredicted RBP4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 GAB1Q13480 694 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 FHL2Q14192 279 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 LRRC24Q50LG9 513 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 JAKMIP3Q5VZ66 844 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 SLC39A5Q6ZMH5 540 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 LAS2Q8IYD9 372 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 PTGR2Q8N8N7 351 aaPredicted RBP4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 GPR150Q8NGU9 434 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 CLEC4CQ8WTT0 213 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 REPS1Q96D71 796 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 HIC2Q96JB3 615 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 TWNKQ96RR1 684 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 NPAS1Q99742 590 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 PLEKHA2Q9HB19 425 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 ASB6Q9NWX5 421 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 IFT80Q9P2H3 777 aaPredicted RBP4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 ZNF69Q9UC07 566 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 SLC13A4Q9UKG4 626 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 B3GNT3Q9Y2A9 372 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 DNAJC16Q9Y2G8 782 aa4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 HEMK1Q9Y5R4 338 aaPredicted RBP4.55□□□□□ -1.68
HMGB1P28-201ENST00000507778 TCRBV5S1A1TA0A578 114 aa4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 STX16-NPEPL1H3BU86 382 aa4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 EYA2O00167 538 aa4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 STX16O14662 325 aa4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 HOXC11O43248 304 aaPredicted RBP4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 SFPQP23246 707 aaKnown RBP eCLIP4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 VPS41P49754 854 aa4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 CHRNDQ07001 517 aa4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 TRPC3Q13507 836 aa4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 LARS2Q15031 903 aaKnown RBP4.54□□□□□ -1.68
HMGB1P28-201ENST00000507778 DLGAP5Q15398 846 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms