RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 ITGB5P18084 799 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 NCF2P19878 526 aaPredicted RBP16.33■□□□□ 0.21
SCLT1-208ENST00000506368 MAGEA3P43357 314 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 IRAK1BP1Q5VVH5 260 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 SLFN12LQ6IEE8 588 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 EPGNQ6UW88 154 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 ZCCHC23Q6ZST2 131 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 CCDC80Q76M96 950 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 MCPH1Q8NEM0 835 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 ZNF420Q8TAQ5 688 aaPredicted RBP16.33■□□□□ 0.21
SCLT1-208ENST00000506368 ADAMTS16Q8TE57 1224 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 CDKL2Q92772 493 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 ZDHHC15Q96MV8 337 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 SORT1Q99523 831 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 TDRD3Q9H7E2 651 aaKnown RBP16.33■□□□□ 0.21
SCLT1-208ENST00000506368 RAB6BQ9NRW1 208 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 ARHGAP28Q9P2N2 729 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 SAE1Q9UBE0 346 aaPredicted RBP16.33■□□□□ 0.21
SCLT1-208ENST00000506368 TCEAL9Q9UHQ7 104 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 SERPINA10Q9UK55 444 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 PCDHA11Q9Y5I1 949 aa16.33■□□□□ 0.21
SCLT1-208ENST00000506368 SLC15A5A6NIM6 579 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 TRIM64CA6NLI5 447 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 VNN1O95497 513 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 ESRRBO95718 433 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 CSH1P0DML2 217 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 CSH2P0DML3 217 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 KRT3P12035 628 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 ME2P23368 584 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 HSD17B4P51659 736 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 RELAQ04206 551 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 ZNF423Q2M1K9 1284 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 CCDC153Q494R4 210 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 C16orf46Q6P387 395 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 DLK2Q6UY11 383 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 UNC5AQ6ZN44 842 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 MAVSQ7Z434 540 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 AMIGO2Q86SJ2 522 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 SLC4A11Q8NBS3 891 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 GIPC3Q8TF64 312 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 PDCD6IPQ8WUM4 868 aaKnown RBP16.33■□□□□ 0.2
SCLT1-208ENST00000506368 USP6NLQ92738 828 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 ABHD8Q96I13 439 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 CGRRF1Q99675 332 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 EBNA1BP2Q99848 306 aaKnown RBP16.33■□□□□ 0.2
SCLT1-208ENST00000506368 SDCBP2Q9H190 292 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 APOBEC3GQ9HC16 384 aaKnown RBP16.33■□□□□ 0.2
SCLT1-208ENST00000506368 PCDHB12Q9Y5F1 795 aa16.33■□□□□ 0.2
SCLT1-208ENST00000506368 GOLGA8QA0A0J9YX86 632 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 GOLGA8OA6NCC3 632 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 SPDYE2BA6NHP3 402 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 SPDYE16A6NNV3 312 aaPredicted RBP16.32■□□□□ 0.2
SCLT1-208ENST00000506368 WDR64B1ANS9 1081 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 GOLGA8NF8WBI6 632 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 MAGEB3O15480 346 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 SORBS2O94875 1100 aaKnown RBP16.32■□□□□ 0.2
SCLT1-208ENST00000506368 ENDOD1O94919 500 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 ALDH2P05091 517 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 SPDYE6P0CI01 402 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 TPSB2P20231 275 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 KRT76Q01546 638 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 BMPR2Q13873 1038 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 PCLAFQ15004 111 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 TPSAB1Q15661 275 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 SPDYE2Q495Y8 402 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 KCTD21Q4G0X4 260 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 C6orf52Q5T4I8 152 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 N4BP2L1Q5TBK1 243 aaPredicted RBP16.32■□□□□ 0.2
SCLT1-208ENST00000506368 FAM160B2Q86V87 743 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 CARM1Q86X55 608 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 LZTR1Q8N653 840 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 DEPDC1BQ8WUY9 529 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 ACSF2Q96CM8 615 aaPredicted RBP16.32■□□□□ 0.2
SCLT1-208ENST00000506368 FERMT1Q9BQL6 677 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 GPBP1L1Q9HC44 474 aaPredicted RBP16.32■□□□□ 0.2
SCLT1-208ENST00000506368 SMYD2Q9NRG4 433 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 ADARB2Q9NS39 739 aaKnown RBP16.32■□□□□ 0.2
SCLT1-208ENST00000506368 UBIAD1Q9Y5Z9 338 aa16.32■□□□□ 0.2
SCLT1-208ENST00000506368 COL2A1P02458 1487 aaPredicted RBP16.32■□□□□ 0.2
SCLT1-208ENST00000506368 ARHGEF37A1IGU5 675 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 HMX2A2RU54 273 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 FAM155AB1AL88 458 aaPredicted RBP16.31■□□□□ 0.2
SCLT1-208ENST00000506368 DCXO43602 365 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 TADA2AO75478 443 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 SERPINB7O75635 380 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 GLDCP23378 1020 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 UBXN2AP68543 259 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 MRPS22P82650 360 aaKnown RBP16.31■□□□□ 0.2
SCLT1-208ENST00000506368 PFKPQ01813 784 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 NFIAQ12857 509 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 ZBED5Q49AG3 693 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 MROH9Q5TGP6 573 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 CAND1Q86VP6 1230 aaKnown RBP16.31■□□□□ 0.2
SCLT1-208ENST00000506368 ZNF784Q8NCA9 323 aaPredicted RBP16.31■□□□□ 0.2
SCLT1-208ENST00000506368 DDHD1Q8NEL9 900 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 RIN3Q8TB24 985 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 RMND5BQ96G75 393 aaPredicted RBP16.31■□□□□ 0.2
SCLT1-208ENST00000506368 ZBED3Q96IU2 234 aaPredicted RBP16.31■□□□□ 0.2
SCLT1-208ENST00000506368 RANBP9Q96S59 729 aa16.31■□□□□ 0.2
SCLT1-208ENST00000506368 ZNF341Q9BYN7 854 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms