RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PSEN2P49810 448 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 TAS2R40P59535 323 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 RBM44Q6ZP01 1051 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 EFHBQ8N7U6 833 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 ZFRQ96KR1 1074 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 FRMD8Q9BZ67 464 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 DDX28Q9NUL7 540 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 FAM8A1Q9UBU6 413 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 SUN2Q9UH99 717 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 IQSEC1Q6DN90 963 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 CXCL17Q6UXB2 119 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 TSHZ1Q6ZSZ6 1077 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 DEFB106AQ8N104 65 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 C12orf29Q8N999 325 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 USP13Q92995 863 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 H0YGN5 161 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 YWHAZP63104 245 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 PLPPR4Q7Z2D5 763 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 NET1Q7Z628 596 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ITFG2Q969R8 447 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 FRMD8P1Q9BZ68 369 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 XPNPEP1Q9NQW7 623 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 NFS1Q9Y697 457 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 IRF1P10914 325 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 SLC1A5Q15758 541 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ANO4Q32M45 955 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 PLEKHA7Q6IQ23 1121 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 DHDDSQ86SQ9 333 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 SETD3Q86TU7 594 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ZNF410Q86VK4 478 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 RFWD2Q8NHY2 731 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 HELQQ8TDG4 1101 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 LENG1Q96BZ8 264 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 CELF6Q96J87 481 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ARHGEF38Q9NXL2 777 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 GRHL1Q9NZI5 618 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ARHGAP28Q9P2N2 729 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 PACSIN3Q9UKS6 424 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ATP11BQ9Y2G3 1177 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 UMODL1Q5DID0 1318 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 BANF1O75531 89 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 RPL5P46777 297 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ACAP1Q15027 740 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ASIC4Q96FT7 647 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ELMO2Q96JJ3 720 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 GPBP1L1Q9HC44 474 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 KCNK4Q9NYG8 393 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 AJAP1Q9UKB5 411 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 COG5Q9UP83 839 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 DCXO43602 365 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 ARF4P18085 180 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 PPARGP37231 505 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 TRPC1P48995 793 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 INPP5AQ14642 412 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 MAPRE1Q15691 268 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 FSCN1Q16658 493 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 UGP2Q16851 508 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 RNF219Q5W0B1 726 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 NAPEPLDQ6IQ20 393 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 PATL1Q86TB9 770 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 RPRD1AQ96P16 312 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 AP4S1Q9Y587 144 aa16.72■□□□□ 0.27
CCDC88B-209ENST00000494080 FSCN2O14926 492 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 MTSS1O43312 755 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 GFAPP14136 432 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 KDELR1P24390 212 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 NUP107P57740 925 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 ALYREFQ86V81 257 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 ULK2Q8IYT8 1036 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 CNDP1Q96KN2 507 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 SLITRK1Q96PX8 696 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 GPR20Q99678 358 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 SDR42E2A6NKP2 422 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 PEX1O43933 1283 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 PEX11AO75192 247 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 GLRA3O75311 464 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 C4orf22Q6V702 233 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 CLVS1Q8IUQ0 354 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 EFCAB3Q8N7B9 438 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 TMEM79Q9BSE2 394 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 CDYLQ9Y232 598 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 ADGRA3Q8IWK6 1321 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 ZMYM2Q9UBW7 1377 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 SIGLEC16A6NMB1 481 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 DEAF1O75398 565 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 KCNA4P22459 653 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 FDFT1P37268 417 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 MRPS22P82650 360 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 SLC6A3Q01959 620 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 KBTBD12Q3ZCT8 623 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 ZDHHC24Q6UX98 284 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 LRRN4Q8WUT4 740 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 RNPEPQ9H4A4 650 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 IL1RL2Q9HB29 575 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 DMAC2Q9NW81 257 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 PCDHA2Q9Y5H9 948 aa16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 ZC3H4Q9UPT8 1303 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-209ENST00000494080 F9P00740 461 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 RALBP11234 206 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 RBL1P28749 1068 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms