RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PCMTD1Q96MG8 357 aaPredicted RBP25.63■■□□□ 1.69
UPF3A-209ENST00000492270 GABRG3Q99928 467 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 NUCKS1Q9H1E3 243 aaKnown RBP25.63■■□□□ 1.69
UPF3A-209ENST00000492270 FAM204AQ9H8W3 233 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 CD248Q9HCU0 757 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 COX16Q9P0S2 106 aa25.63■■□□□ 1.69
UPF3A-209ENST00000492270 NOCTQ9UK39 431 aaKnown RBP25.63■■□□□ 1.69
UPF3A-209ENST00000492270 LRRC10BA6NIK2 292 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 GABRG2P18507 467 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 BCKDHBP21953 392 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 SLC6A3Q01959 620 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 EIF4EBP2Q13542 120 aaPredicted RBP25.62■■□□□ 1.69
UPF3A-209ENST00000492270 C2CD6Q53TS8 623 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 SLC26A9Q7LBE3 791 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 OLIG1Q8TAK6 271 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 SORCS1Q8WY21 1168 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 ZC3H10Q96K80 434 aaKnown RBP25.62■■□□□ 1.69
UPF3A-209ENST00000492270 BPIFA3Q9BQP9 254 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 FUCA2Q9BTY2 467 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 NAT10Q9H0A0 1025 aaKnown RBP25.62■■□□□ 1.69
UPF3A-209ENST00000492270 USP18Q9UMW8 372 aa25.62■■□□□ 1.69
UPF3A-209ENST00000492270 DAB1O75553 588 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 APOEP02649 317 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 SOX5P35711 763 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 IL12RB1P42701 662 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 USP39Q53GS9 565 aaKnown RBP25.61■■□□□ 1.69
UPF3A-209ENST00000492270 RNF43Q68DV7 783 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 SDE2Q6IQ49 451 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 PGBD3Q8N328 593 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 FRMD1Q8N878 549 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 NEK11Q8NG66 645 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 SPAG5Q96R06 1193 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 CIPCQ9C0C6 399 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 ABCB8Q9NUT2 735 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 ELOVL2Q9NXB9 296 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 STIM2Q9P246 746 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 THAP10Q9P2Z0 257 aaPredicted RBP25.61■■□□□ 1.69
UPF3A-209ENST00000492270 STON1Q9Y6Q2 735 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 DCHS1Q96JQ0 3298 aa25.61■■□□□ 1.69
UPF3A-209ENST00000492270 NYNRINQ9P2P1 1898 aaKnown RBP25.6■■□□□ 1.69
UPF3A-209ENST00000492270 GBP1P32455 592 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 SNX16P57768 344 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 RPS24P62847 133 aaKnown RBP25.6■■□□□ 1.69
UPF3A-209ENST00000492270 NOMO3P69849 1222 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 CDK17Q00537 523 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 CCDC6Q16204 474 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 MS4A13Q5J8X5 152 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 HJURPQ8NCD3 748 aaPredicted RBP25.6■■□□□ 1.69
UPF3A-209ENST00000492270 ERGIC2Q96RQ1 377 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 ADAM33Q9BZ11 813 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 SLC6A17Q9H1V8 727 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 ARRDC1-AS1Q9H2J1 176 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 DDIT4Q9NX09 232 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 CALCOCO1Q9P1Z2 691 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 GGA2Q9UJY4 613 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 CEP250Q9BV73 2442 aa25.6■■□□□ 1.69
UPF3A-209ENST00000492270 EPN2O95208 641 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 CHRNB2P17787 502 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 CD70P32970 193 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 P2RY2P41231 377 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 GABRB2P47870 512 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 ZNF234Q14588 700 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 KLHL40Q2TBA0 621 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 OTUD1Q5VV17 481 aaPredicted RBP25.59■■□□□ 1.69
UPF3A-209ENST00000492270 NAA35Q5VZE5 725 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 RAP1GAP2Q684P5 730 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 CHST9Q7L1S5 443 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 ERICH1Q86X53 443 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 XYLT1Q86Y38 959 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 CFAP52Q8N1V2 620 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 ZNF397Q8NF99 534 aaPredicted RBP25.59■■□□□ 1.69
UPF3A-209ENST00000492270 UCMAQ8WVF2 138 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 CPA5Q8WXQ8 436 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 DDX50Q9BQ39 737 aaKnown RBP25.59■■□□□ 1.69
UPF3A-209ENST00000492270 SEMA4GQ9NTN9 838 aa25.59■■□□□ 1.69
UPF3A-209ENST00000492270 SYCE3A1L190 88 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 TEX33O43247 280 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 LSM8O95777 96 aaKnown RBP25.58■■□□□ 1.69
UPF3A-209ENST00000492270 NDUFV2P19404 249 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 STAT1P42224 750 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 ZNF165P49910 485 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 RNASE9P60153 205 aaKnown RBP25.58■■□□□ 1.69
UPF3A-209ENST00000492270 FMO1Q01740 532 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 CDR2Q01850 454 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 EIF4HQ15056 248 aaKnown RBP25.58■■□□□ 1.69
UPF3A-209ENST00000492270 MPP7Q5T2T1 576 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 KIAA0907Q7Z7F0 614 aaPredicted RBP25.58■■□□□ 1.69
UPF3A-209ENST00000492270 ADIPOR2Q86V24 386 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 CHSY1Q86X52 802 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 ZDHHC17Q8IUH5 632 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 LGI2Q8N0V4 545 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 DDX51Q8N8A6 666 aaKnown RBP eCLIP25.58■■□□□ 1.69
UPF3A-209ENST00000492270 C18orf8Q96DM3 657 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 BTN2A3PQ96KV6 586 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 IRX2Q9BZI1 471 aaPredicted RBP25.58■■□□□ 1.69
UPF3A-209ENST00000492270 SLTMQ9NWH9 1034 aaKnown RBP eCLIP25.58■■□□□ 1.69
UPF3A-209ENST00000492270 DAAM1Q9Y4D1 1078 aa25.58■■□□□ 1.69
UPF3A-209ENST00000492270 DYNC1LI1Q9Y6G9 523 aaKnown RBP25.58■■□□□ 1.69
UPF3A-209ENST00000492270 PABPC1P11940 636 aaKnown RBP25.57■■□□□ 1.68
UPF3A-209ENST00000492270 TFE3P19532 575 aaPredicted RBP25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms