RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 PPP1R7Q15435 360 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 PABPC1LQ4VXU2 614 aaKnown RBP22.38■■□□□ 1.17
SMC4-221ENST00000489573 TMEM150AQ86TG1 271 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 ATP6V0D2Q8N8Y2 350 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 ERP44Q9BS26 406 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 MAN1C1Q9NR34 630 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 SLC12A6Q9UHW9 1150 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 ESYT3A0FGR9 886 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 CCDC151A5D8V7 595 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 LRIG2O94898 1065 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 OAS1P00973 400 aaKnown RBP22.38■■□□□ 1.17
SMC4-221ENST00000489573 HTR7P34969 479 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 GGCXP38435 758 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 TMC8Q8IU68 726 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 CASKIN2Q8WXE0 1202 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 SEC14L1Q92503 715 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 SIK2Q9H0K1 926 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 LMAN2LQ9H0V9 348 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 ETNK2Q9NVF9 386 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 XPO7Q9UIA9 1087 aaKnown RBP22.38■■□□□ 1.17
SMC4-221ENST00000489573 HEY1Q9Y5J3 304 aa22.38■■□□□ 1.17
SMC4-221ENST00000489573 DCLK1O15075 740 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 CCL16O15467 120 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 ERLIN1O75477 346 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 HMBSP08397 361 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 NR2C2P49116 596 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 NRG1Q02297 640 aaPredicted RBP22.37■■□□□ 1.17
SMC4-221ENST00000489573 MTA1Q13330 715 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 PTK6Q13882 451 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 KCTD19Q17RG1 926 aaPredicted RBP22.37■■□□□ 1.17
SMC4-221ENST00000489573 NUGGCQ68CJ6 796 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 DUPD1Q68J44 220 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 CCNI2Q6ZMN8 369 aaPredicted RBP22.37■■□□□ 1.17
SMC4-221ENST00000489573 GSTA5Q7RTV2 222 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 ALLCQ8N6M5 410 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 SLC22A17Q8WUG5 538 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 ARNTL2Q8WYA1 636 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 BTN2A3PQ96KV6 586 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 LRRC3Q9BY71 257 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 HS3ST4Q9Y661 456 aa22.37■■□□□ 1.17
SMC4-221ENST00000489573 C2orf78A6NCI8 922 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 RBP3P10745 1247 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 EPCAMP16422 314 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 ERCC2P18074 760 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 EPHB2P29323 1055 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 BMP8BP34820 402 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 GBE1Q04446 702 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 MANEALQ5VSG8 457 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 HS6ST3Q8IZP7 471 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 C1orf74Q96LT6 269 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 TRIM31Q9BZY9 425 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 DPH5Q9H2P9 285 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 SLC28A3Q9HAS3 691 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 FAM114A2Q9NRY5 505 aa22.36■■□□□ 1.17
SMC4-221ENST00000489573 H7C0C1 242 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 SLC34A2O95436 690 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 GABRR2P28476 465 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 HOXA9P31269 272 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 HOXC13P31276 330 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 ATP5OP48047 213 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 CUL1Q13616 776 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 PAFAH1B3Q15102 231 aaKnown RBP22.35■■□□□ 1.17
SMC4-221ENST00000489573 ACBD5Q5T8D3 534 aaPredicted RBP22.35■■□□□ 1.17
SMC4-221ENST00000489573 PIK3R6Q5UE93 754 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 TMCO3Q6UWJ1 677 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 ZC3H18Q86VM9 953 aaKnown RBP22.35■■□□□ 1.17
SMC4-221ENST00000489573 UNC45BQ8IWX7 931 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 IFT81Q8WYA0 676 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 TBC1D31Q96DN5 1066 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 GCNAQ96QF7 691 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 TMEM121Q9BTD3 319 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 ASAH2Q9NR71 780 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 DPP7Q9UHL4 492 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 NEU2Q9Y3R4 380 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 MFHAS1Q9Y4C4 1052 aa22.35■■□□□ 1.17
SMC4-221ENST00000489573 SGK1O00141 431 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 MFSD11O43934 449 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 SRGAP2BP0DMP2 458 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 CDC25CP30307 473 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 CARSP49589 748 aaKnown RBP22.34■■□□□ 1.17
SMC4-221ENST00000489573 CLCN6P51797 869 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 DRG2P55039 364 aaKnown RBP22.34■■□□□ 1.17
SMC4-221ENST00000489573 MLLT6P55198 1093 aaPredicted RBP22.34■■□□□ 1.17
SMC4-221ENST00000489573 COG7P83436 770 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 TRADDQ15628 312 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 BZW1Q7L1Q6 419 aaKnown RBP22.34■■□□□ 1.17
SMC4-221ENST00000489573 EIF1ADQ8N9N8 165 aaKnown RBP22.34■■□□□ 1.17
SMC4-221ENST00000489573 GDPD5Q8WTR4 605 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 MRPS31Q92665 395 aaKnown RBP22.34■■□□□ 1.17
SMC4-221ENST00000489573 PLD4Q96BZ4 506 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 TRPC7Q9HCX4 862 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 DTLQ9NZJ0 730 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 NEU3Q9UQ49 428 aa22.34■■□□□ 1.17
SMC4-221ENST00000489573 E9PAM4 449 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 PER2O15055 1255 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 KRT14P02533 472 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 MYBL2P10244 700 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 KCNQ1P51787 676 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 SLC10A2Q12908 348 aaPredicted RBP22.33■■□□□ 1.17
SMC4-221ENST00000489573 XRCC4Q13426 336 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms