RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 KCNA4P22459 653 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 SULT1E1P49888 294 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 ARHGAP8P85298 464 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 DCAF6Q58WW2 860 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 N4BP2L1Q5TBK1 243 aaPredicted RBP18.49■□□□□ 0.55
VIM-206ENST00000487938 FAM91A1Q658Y4 838 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 TIFABQ6ZNK6 161 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 TMPRSS6Q8IU80 811 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 CCNYQ8ND76 341 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 STMN2Q93045 179 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 SPATA13Q96N96 652 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 OLFM3Q96PB7 478 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 TRIM6Q9C030 488 aaPredicted RBP18.49■□□□□ 0.55
VIM-206ENST00000487938 SNX25Q9H3E2 840 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 VTA1Q9NP79 307 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 XPNPEP3Q9NQH7 507 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 EMCNQ9ULC0 261 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 E2F8A0AVK6 867 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 CREB3O43889 395 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 KIF1CO43896 1103 aaKnown RBP18.48■□□□□ 0.55
VIM-206ENST00000487938 VHLP40337 213 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 OLIG2Q13516 323 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 PDE1CQ14123 709 aaPredicted RBP18.48■□□□□ 0.55
VIM-206ENST00000487938 TSNAXIP1Q2TAA8 658 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 FBXO47Q5MNV8 452 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 PACS1Q6VY07 963 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 TP53INP2Q8IXH6 220 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 P2RY11Q96G91 374 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 ZNF333Q96JL9 665 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 CCDC106Q9BWC9 280 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 THAP1Q9NVV9 213 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 KPNA7A9QM74 516 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 RNF103O00237 685 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 NEBLO76041 1014 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 SMPD1P17405 629 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 SLC34A1Q06495 639 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 PPM1JQ5JR12 505 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 CRYBG2Q8N1P7 616 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 NME8Q8N427 588 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 SHCBP1Q8NEM2 672 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 GPRC5AQ8NFJ5 357 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 SCG3Q8WXD2 468 aaKnown RBP18.48■□□□□ 0.55
VIM-206ENST00000487938 ARNTL2Q8WYA1 636 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 KATNBL1Q9H079 304 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 MMADHCQ9H3L0 296 aaPredicted RBP18.48■□□□□ 0.55
VIM-206ENST00000487938 MORF4L1Q9UBU8 362 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 TAGLN3Q9UI15 199 aa18.48■□□□□ 0.55
VIM-206ENST00000487938 SPECC1L-ADORA2AF8WAN1 911 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 CLDN5O00501 218 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 ALDH1A2O94788 518 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 PSMB4P28070 264 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 TKTP29401 623 aaKnown RBP18.47■□□□□ 0.55
VIM-206ENST00000487938 FDFT1P37268 417 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 MATKP42679 507 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 NIPAL4Q0D2K0 466 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 STEAP4Q687X5 459 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 CAPRIN2Q6IMN6 1127 aaKnown RBP18.47■□□□□ 0.55
VIM-206ENST00000487938 LRRC8BQ6P9F7 803 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 ALKAL1Q6UXT8 129 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 ZNF778Q96MU6 729 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 THTPAQ9BU02 230 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 RNF39Q9H2S5 420 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 GTF2IRD1Q9UHL9 959 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 DNAJC16Q9Y2G8 782 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 RBM47A0AV96 593 aaKnown RBP18.47■□□□□ 0.55
VIM-206ENST00000487938 GPR32O75388 356 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 TOMM70O94826 608 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 MMP3P08254 477 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 F7P08709 466 aaPredicted RBP18.47■□□□□ 0.55
VIM-206ENST00000487938 ERVK-10P10266 1014 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 MLH1P40692 756 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 NDUFV1P49821 464 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 MXRA7P84157 204 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 ADIGQ0VDE8 80 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 MBLAC2Q68D91 279 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 NOTUMQ6P988 496 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 KYAT3Q6YP21 454 aaKnown RBP18.47■□□□□ 0.55
VIM-206ENST00000487938 LRRC74BQ6ZQY2 392 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 MARK2Q7KZI7 788 aaKnown RBP18.47■□□□□ 0.55
VIM-206ENST00000487938 STRADAQ7RTN6 431 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 PIGZQ86VD9 579 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 LMNTD2Q8IXW0 634 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 RAB3IL1Q8TBN0 382 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 EMID1Q96A84 441 aaPredicted RBP18.47■□□□□ 0.55
VIM-206ENST00000487938 SYBUQ9NX95 663 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 WASF2Q9Y6W5 498 aa18.47■□□□□ 0.55
VIM-206ENST00000487938 SMIM28A0A1B0GU29 152 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 PIRO00625 290 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 BEST1O76090 585 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 FGF3P11487 239 aaPredicted RBP18.46■□□□□ 0.55
VIM-206ENST00000487938 ACADSP16219 412 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 SLC1A6P48664 564 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 PDE1BQ01064 536 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 WASHC5Q12768 1159 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 NME3Q13232 169 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 SLC25A52Q3SY17 297 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 EFHC1Q5JVL4 640 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 ATG14Q6ZNE5 492 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 ARCQ7LC44 396 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 SCUBE1Q8IWY4 988 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms