RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ARID3AQ99856 593 aa16.05■□□□□ 0.16
MCF2L-228ENST00000487354 BTBD1Q9H0C5 482 aa16.05■□□□□ 0.16
MCF2L-228ENST00000487354 MTG2Q9H4K7 406 aa16.05■□□□□ 0.16
MCF2L-228ENST00000487354 ZSCAN16Q9H4T2 348 aaPredicted RBP16.05■□□□□ 0.16
MCF2L-228ENST00000487354 CYP3A43Q9HB55 503 aa16.05■□□□□ 0.16
MCF2L-228ENST00000487354 FTSJ1Q9UET6 329 aa16.05■□□□□ 0.16
MCF2L-228ENST00000487354 SERGEFQ9UGK8 458 aa16.05■□□□□ 0.16
MCF2L-228ENST00000487354 STOML2Q9UJZ1 356 aa16.05■□□□□ 0.16
MCF2L-228ENST00000487354 IKBKBO14920 756 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 FSBPO95073 299 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 CYBBP04839 570 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 TRIM49P0CI25 452 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 TRIM49CP0CI26 452 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 AFMP43652 599 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 PDE4CQ08493 712 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 DNAJC3Q13217 504 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 FNDC3BQ53EP0 1204 aaKnown RBP16.04■□□□□ 0.16
MCF2L-228ENST00000487354 PRAMEF14Q5SWL7 426 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 CHST9Q7L1S5 443 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 PIGZQ86VD9 579 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 NDRG1Q92597 394 aaKnown RBP16.04■□□□□ 0.16
MCF2L-228ENST00000487354 LMLNQ96KR4 655 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 SLC6A18Q96N87 628 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 NIF3L1Q9GZT8 377 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 ABCB8Q9NUT2 735 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 PCDHGA1Q9Y5H4 931 aa16.04■□□□□ 0.16
MCF2L-228ENST00000487354 MAST4O15021 2626 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.03■□□□□ 0.16
MCF2L-228ENST00000487354 TK2O00142 265 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 TULP2O00295 520 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 WNT9AO14904 365 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 VILLO15195 856 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 YEATS4O95619 227 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 PLA2G2AP14555 144 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 ACADVLP49748 655 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 YWHAGP61981 247 aaKnown RBP eCLIP16.03■□□□□ 0.16
MCF2L-228ENST00000487354 ZBTB16Q05516 673 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 C19orf57Q0VDD7 668 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 E2F5Q15329 346 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 PM20D1Q6GTS8 502 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 SLC4A11Q8NBS3 891 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 SAP25Q8TEE9 199 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 WFIKKN2Q8TEU8 576 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 NXPE2Q96DL1 559 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 SGK2Q9HBY8 427 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 GGA2Q9UJY4 613 aa16.03■□□□□ 0.16
MCF2L-228ENST00000487354 PDXKO00764 312 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 ENC1O14682 589 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 KIF20AO95235 890 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 CD70P32970 193 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 GCLMP48507 274 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 BCAT1P54687 386 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 RACK1P63244 317 aaKnown RBP16.02■□□□□ 0.16
MCF2L-228ENST00000487354 KCNJ12Q14500 433 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 MPPE1Q53F39 396 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 ZNF394Q53GI3 561 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 KIAA0895LQ68EN5 471 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 FBXL19Q6PCT2 694 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 FMNL3Q8IVF7 1028 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 TSC1Q92574 1164 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 UBXN6Q9BZV1 441 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 RSPH9Q9H1X1 276 aaPredicted RBP16.02■□□□□ 0.16
MCF2L-228ENST00000487354 PABPC3Q9H361 631 aaKnown RBP16.02■□□□□ 0.16
MCF2L-228ENST00000487354 FBRSQ9HAH7 460 aa16.02■□□□□ 0.16
MCF2L-228ENST00000487354 COL27A1Q8IZC6 1860 aaPredicted RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 A0A1W2PPC4 97 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 A0A1W2PR77 199 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 CYSRT1A8MQ03 144 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 ACTN4O43707 911 aaKnown RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 RFPL3O75679 317 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 DLDP09622 509 aaKnown RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 PABPC1P11940 636 aaKnown RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 VAMP7P51809 220 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 RAD23BP54727 409 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 MCCD1P59942 119 aaPredicted RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 ARID5AQ03989 594 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 RTP5Q14D33 572 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 KMT5BQ4FZB7 885 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 RESP18Q5W5W9 173 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 MBLAC2Q68D91 279 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 ARHGAP17Q68EM7 881 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 RSRC2Q7L4I2 434 aaKnown RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 KANSL1Q7Z3B3 1105 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 AHI1Q8N157 1196 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 ARHGAP18Q8N392 663 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 ZNF843Q8N446 348 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 SNIP1Q8TAD8 396 aaKnown RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 SEMA4DQ92854 862 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 INTS4Q96HW7 963 aaKnown RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 CNDP2Q96KP4 475 aaKnown RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 ELF4Q99607 663 aaPredicted RBP16.01■□□□□ 0.15
MCF2L-228ENST00000487354 ULBP1Q9BZM6 244 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 SFMBT1Q9UHJ3 866 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 STRIP2Q9ULQ0 834 aa16.01■□□□□ 0.15
MCF2L-228ENST00000487354 COL6A6A6NMZ7 2263 aa16■□□□□ 0.15
MCF2L-228ENST00000487354 MAPK13O15264 365 aa16■□□□□ 0.15
MCF2L-228ENST00000487354 MSI1O43347 362 aaKnown RBP16■□□□□ 0.15
MCF2L-228ENST00000487354 DNTTP04053 509 aa16■□□□□ 0.15
MCF2L-228ENST00000487354 TKTL1P51854 596 aa16■□□□□ 0.15
MCF2L-228ENST00000487354 GALCP54803 685 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms