RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 RFKQ969G6 155 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 SH3KBP1Q96B97 665 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 PBKQ96KB5 322 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 SAP30LQ9HAJ7 183 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 PDE11AQ9HCR9 933 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 SMYD2Q9NRG4 433 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D14Q9P2M4 693 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 GPR34Q9UPC5 381 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 ENTPD2Q9Y5L3 495 aa5.69□□□□□ -1.5
UPF3B-203ENST00000478840 GAGE10A6NGK3 116 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 SH2D7A6NKC9 451 aaPredicted RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 VWC2LB2RUY7 222 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 H3BNC9 293 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 CA12O43570 354 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 ZNF500O60304 480 aaPredicted RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 FAM20BO75063 409 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 MBPP02686 304 aaPredicted RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 CLEC3BP05452 202 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 TMIGD3P0DMS9 266 aaPredicted RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 ITPKBP27987 946 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 DUSP1P28562 367 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 PCSK6P29122 969 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 CTGFP29279 349 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 EPHA8P29322 1005 aaPredicted RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 STAT1P42224 750 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 TPTEP56180 551 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 SLC25A3Q00325 362 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 E2F1Q01094 437 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 GUCY1B3Q02153 619 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 NUCB1Q02818 461 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 R3HDM1Q15032 1099 aaKnown RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 PRKD1Q15139 912 aaPredicted RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 NFIL3Q16649 462 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 SNX30Q5VWJ9 437 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 DENND2CQ68D51 928 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 ZNF280DQ6N043 979 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 DPY19L3Q6ZPD9 716 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 USP51Q70EK9 711 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 B4GALNT4Q76KP1 1039 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 ZNF276Q8N554 614 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 XAGE5Q8WWM1 108 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 PRR11Q96HE9 360 aaPredicted RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 CINPQ9BW66 212 aaPredicted RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 LMAN2LQ9H0V9 348 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 BEX4Q9NWD9 120 aaPredicted RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 KCTD5Q9NXV2 234 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 MGAT4CQ9UBM8 478 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 DKK3Q9UBP4 350 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 SUFUQ9UMX1 484 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 NAALADL1Q9UQQ1 740 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 TCAF1Q9Y4C2 921 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 COPG1Q9Y678 874 aaKnown RBP5.68□□□□□ -1.5
UPF3B-203ENST00000478840 KDM3AQ9Y4C1 1321 aa5.68□□□□□ -1.5
UPF3B-203ENST00000478840 GRM8O00222 908 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 MPPED1O15442 326 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 DOK2O60496 412 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TMCC2O75069 709 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 PEX11BO96011 259 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 WEE2P0C1S8 567 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 EGR2P11161 476 aaPredicted RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 PAFAH1B1P43034 410 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 RAD52P43351 418 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TXNL4AP83876 142 aaKnown RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 SETQ01105 290 aaPredicted RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 CCDC15Q0P6D6 951 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TP53BP2Q13625 1128 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TMEM88Q6PEY1 159 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 Q6ZWC4 215 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 PARS2Q7L3T8 475 aaKnown RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 WDR53Q7Z5U6 358 aaPredicted RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 DIS3L2Q8IYB7 885 aaKnown RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TMTC2Q8N394 836 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TTC9BQ8N6N2 239 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 ZNF366Q8N895 744 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 BEND2Q8NDZ0 799 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TOR1AIP2Q8NFQ8 470 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 CLEC4CQ8WTT0 213 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 SLC25A43Q8WUT9 341 aaPredicted RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TIGD1Q96MW7 591 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 LENG8Q96PV6 779 aaPredicted RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 NUDT16L1Q9BRJ7 211 aaKnown RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 INTS2Q9H0H0 1204 aaKnown RBP5.67□□□□□ -1.5
UPF3B-203ENST00000478840 PDCL3Q9H2J4 239 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 GHITMQ9H3K2 345 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 PARD6AQ9NPB6 346 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 SNX15Q9NRS6 342 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 KRT84Q9NSB2 600 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 PARPBPQ9NWS1 579 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 ZDHHC7Q9NXF8 308 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TAS2R10Q9NYW0 307 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 HCN3Q9P1Z3 774 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 AMFRQ9UKV5 643 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 TESMINQ9Y4I5 508 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 PCDHB2Q9Y5E7 798 aa5.67□□□□□ -1.5
UPF3B-203ENST00000478840 KRTAP4-8A0A0G2JLE6 195 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 TNPO2O14787 897 aaKnown RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 TSPAN4O14817 238 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 YY2O15391 372 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 PTP4A3O75365 173 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 SGPL1O95470 568 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms