RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 INCA1Q0VD86 236 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 RTP5Q14D33 572 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 STK38Q15208 465 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 KIAA0895LQ68EN5 471 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 GPR155Q7Z3F1 870 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 FAM217AQ8IXS0 508 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 GANCQ8TET4 914 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 GOLGA1Q92805 767 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 ARID3AQ99856 593 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 DNAI2Q9GZS0 605 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 DMAC2Q9NW81 257 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 SUN2Q9UH99 717 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 TENM4Q6N022 2769 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 COL5A1P20908 1838 aaPredicted RBP17.94■□□□□ 0.46
VIM-204ENST00000478746 TEX51A0A1B0GUA7 166 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 A0A1W2PPC4 97 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 FAM47DPA6NHR8 397 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 HLA-DRAP01903 254 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 IGHV4-34P06331 123 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 SYT1P21579 422 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 HOXD9P28356 352 aaPredicted RBP17.94■□□□□ 0.46
VIM-204ENST00000478746 CASP1P29466 404 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 PIK3CAP42336 1068 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 HARS2P49590 506 aaKnown RBP17.94■□□□□ 0.46
VIM-204ENST00000478746 PPP1R26Q5T8A7 1209 aaPredicted RBP17.94■□□□□ 0.46
VIM-204ENST00000478746 HES3Q5TGS1 186 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 ADIPOR2Q86V24 386 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 EID2Q8N6I1 236 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 TMC2Q8TDI7 906 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 FGF11Q92914 225 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 PLD4Q96BZ4 506 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 TMA16Q96EY4 203 aaKnown RBP17.94■□□□□ 0.46
VIM-204ENST00000478746 BLZF1Q9H2G9 400 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 CYP3A43Q9HB55 503 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 ABCB8Q9NUT2 735 aa17.94■□□□□ 0.46
VIM-204ENST00000478746 PVALEFA0A1B0GWK0 134 aa17.93■□□□□ 0.46
VIM-204ENST00000478746 IKBKBO14920 756 aa17.93■□□□□ 0.46
VIM-204ENST00000478746 ATP5BP06576 529 aaKnown RBP17.93■□□□□ 0.46
VIM-204ENST00000478746 DLDP09622 509 aaKnown RBP17.93■□□□□ 0.46
VIM-204ENST00000478746 CD58P19256 250 aa17.93■□□□□ 0.46
VIM-204ENST00000478746 NASPP49321 788 aaPredicted RBP17.93■□□□□ 0.46
VIM-204ENST00000478746 YWHAGP61981 247 aaKnown RBP eCLIP17.93■□□□□ 0.46
VIM-204ENST00000478746 TRIP4Q15650 581 aaPredicted RBP17.93■□□□□ 0.46
VIM-204ENST00000478746 ZNF776Q68DI1 518 aaPredicted RBP17.93■□□□□ 0.46
VIM-204ENST00000478746 SLC9A9Q8IVB4 645 aa17.93■□□□□ 0.46
VIM-204ENST00000478746 LINC00301Q8NCQ3 95 aa17.93■□□□□ 0.46
VIM-204ENST00000478746 SNIP1Q8TAD8 396 aaKnown RBP17.93■□□□□ 0.46
VIM-204ENST00000478746 SAP25Q8TEE9 199 aa17.93■□□□□ 0.46
VIM-204ENST00000478746 SLC6A18Q96N87 628 aa17.93■□□□□ 0.46
VIM-204ENST00000478746 GGA2Q9UJY4 613 aa17.93■□□□□ 0.46
VIM-204ENST00000478746 MYLKQ15746 1914 aa17.93■□□□□ 0.46
VIM-204ENST00000478746 MUC22E2RYF6 1773 aaPredicted RBP17.93■□□□□ 0.46
VIM-204ENST00000478746 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.92■□□□□ 0.46
VIM-204ENST00000478746 CAPN8A6NHC0 703 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 J3QKU1 62 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 SPTLC2O15270 562 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 PABPC1P11940 636 aaKnown RBP17.92■□□□□ 0.46
VIM-204ENST00000478746 ACADVLP49748 655 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 GALCP54803 685 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 CFHR1Q03591 330 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 CUL4AQ13619 759 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 SHBQ15464 509 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 MBLAC2Q68D91 279 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 FBXL19Q6PCT2 694 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 USP30Q70CQ3 517 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 KIAA0907Q7Z7F0 614 aaPredicted RBP17.92■□□□□ 0.46
VIM-204ENST00000478746 AHI1Q8N157 1196 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 HEXIM2Q96MH2 286 aaKnown RBP17.92■□□□□ 0.46
VIM-204ENST00000478746 BACH2Q9BYV9 841 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 UBXN6Q9BZV1 441 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 IMPG2Q9BZV3 1241 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 UPF2Q9HAU5 1272 aaKnown RBP17.92■□□□□ 0.46
VIM-204ENST00000478746 MAGEF1Q9HAY2 307 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 AASDHPPTQ9NRN7 309 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 FBXL12Q9NXK8 326 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 SCML1Q9UN30 329 aa17.92■□□□□ 0.46
VIM-204ENST00000478746 MGAQ8IWI9 3026 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 YKT6O15498 198 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 WNT1P04628 370 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 POLR2EP19388 210 aaKnown RBP17.91■□□□□ 0.46
VIM-204ENST00000478746 CD38P28907 300 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 ACTN2P35609 894 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 ZNF445P59923 1031 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 SFSWAPQ12872 951 aaKnown RBP17.91■□□□□ 0.46
VIM-204ENST00000478746 ZNF394Q53GI3 561 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 NCEH1Q6PIU2 408 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 FMNL3Q8IVF7 1028 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.91■□□□□ 0.46
VIM-204ENST00000478746 TSC1Q92574 1164 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 TMEM176AQ96HP8 235 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 RSPH9Q9H1X1 276 aaPredicted RBP17.91■□□□□ 0.46
VIM-204ENST00000478746 PABPC3Q9H361 631 aaKnown RBP17.91■□□□□ 0.46
VIM-204ENST00000478746 ZSCAN16Q9H4T2 348 aaPredicted RBP17.91■□□□□ 0.46
VIM-204ENST00000478746 EBF2Q9HAK2 575 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 APOBEC3GQ9HC16 384 aaKnown RBP17.91■□□□□ 0.46
VIM-204ENST00000478746 GDF3Q9NR23 364 aa17.91■□□□□ 0.46
VIM-204ENST00000478746 PLXNA2O75051 1894 aa17.9■□□□□ 0.46
VIM-204ENST00000478746 MAST4O15021 2626 aa17.9■□□□□ 0.46
VIM-204ENST00000478746 TP53BP1Q12888 1972 aaPredicted RBP17.9■□□□□ 0.46
VIM-204ENST00000478746 LRRC72A6NJI9 287 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms