RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 M0QYT0 321 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 HRO43593 1189 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 TBL1XO60907 577 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 APBB3O95704 486 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 UNGP13051 313 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-206ENST00000478214 TFE3P19532 575 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-206ENST00000478214 FLT3P36888 993 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 WASP42768 502 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 UBASH3AP57075 661 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 RPS24P62847 133 aaKnown RBP16.17■□□□□ 0.18
HMGA1-206ENST00000478214 NME3Q13232 169 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 CRY1Q16526 586 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 CLEC16AQ2KHT3 1053 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 EOGTQ5NDL2 527 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 ANKS1BQ7Z6G8 1248 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 PHLDB2Q86SQ0 1253 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 SUMF1Q8NBK3 374 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 KCNV2Q8TDN2 545 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 RNF34Q969K3 372 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 BTN2A3PQ96KV6 586 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 PRICKLE1Q96MT3 831 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-206ENST00000478214 NPY6RQ99463 290 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 TTYH3Q9C0H2 523 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 EPC1Q9H2F5 836 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 SEPT11Q9NVA2 429 aaKnown RBP16.17■□□□□ 0.18
HMGA1-206ENST00000478214 FANCMQ8IYD8 2048 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 CCDC163A0A0D9SF12 145 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 KCNU1A8MYU2 1149 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 AXIN1O15169 862 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 CCDC172P0C7W6 258 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 SLC2A3P11169 496 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 HLA-FP30511 346 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 CCR1P32246 355 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 PBX1P40424 430 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 DGKEP52429 567 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 CENPCQ03188 943 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 PTP4A2Q12974 167 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 MS4A13Q5J8X5 152 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 MPP7Q5T2T1 576 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 E4F1Q66K89 784 aaPredicted RBP16.16■□□□□ 0.18
HMGA1-206ENST00000478214 RAP1GAP2Q684P5 730 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 RNF43Q68DV7 783 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 TRNP1Q6NT89 227 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 TRMT11Q7Z4G4 463 aaKnown RBP16.16■□□□□ 0.18
HMGA1-206ENST00000478214 CHSY1Q86X52 802 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 CFAP52Q8N1V2 620 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 ATP6V0D2Q8N8Y2 350 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 HJURPQ8NCD3 748 aaPredicted RBP16.16■□□□□ 0.18
HMGA1-206ENST00000478214 WFDC5Q8TCV5 224 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 NT5C3BQ969T7 300 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 TBCBQ99426 244 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 IRX2Q9BZI1 471 aaPredicted RBP16.16■□□□□ 0.18
HMGA1-206ENST00000478214 TSPY26PQ9H489 355 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 PIGVQ9NUD9 493 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 RRN3Q9NYV6 651 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 IFNKQ9P0W0 207 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 STIM2Q9P246 746 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 SLC12A6Q9UHW9 1150 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 TMEM59LQ9UK28 342 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 STAP1Q9ULZ2 295 aa16.16■□□□□ 0.18
HMGA1-206ENST00000478214 EP300Q09472 2414 aaPredicted RBP16.16■□□□□ 0.18
HMGA1-206ENST00000478214 ABCB4P21439 1286 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 TACR2P21452 398 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 PTPRZ1P23471 2315 aaPredicted RBP16.15■□□□□ 0.18
HMGA1-206ENST00000478214 NTSR1P30989 418 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 NSFP46459 744 aaKnown RBP16.15■□□□□ 0.18
HMGA1-206ENST00000478214 SULT1E1P49888 294 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 ASIC2Q16515 512 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 TMEM215Q68D42 235 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 ANO7Q6IWH7 933 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 LRSAM1Q6UWE0 723 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 CHPFQ8IZ52 775 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 LGI2Q8N0V4 545 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 EMC1Q8N766 993 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 OLIG1Q8TAK6 271 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 SYT11Q9BT88 431 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 METTL5Q9NRN9 209 aaKnown RBP16.15■□□□□ 0.18
HMGA1-206ENST00000478214 ABCB8Q9NUT2 735 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 ELOVL2Q9NXB9 296 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 CACNA2D2Q9NY47 1150 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 ADAM22Q9P0K1 906 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 EBF1Q9UH73 591 aa16.15■□□□□ 0.18
HMGA1-206ENST00000478214 SMG5Q9UPR3 1016 aaKnown RBP16.15■□□□□ 0.18
HMGA1-206ENST00000478214 WASH3PC4AMC7 463 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 GJB6O95452 261 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 HOXB2P14652 356 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 CNR2P34972 360 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 DEUP1Q05D60 604 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 SIM2Q14190 667 aaPredicted RBP16.14■□□□□ 0.17
HMGA1-206ENST00000478214 LPAL2Q16609 132 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 SLC25A52Q3SY17 297 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 SFMBT2Q5VUG0 894 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 PRR23BQ6ZRT6 265 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 PHF13Q86YI8 300 aaPredicted RBP16.14■□□□□ 0.17
HMGA1-206ENST00000478214 MFN1Q8IWA4 741 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.14■□□□□ 0.17
HMGA1-206ENST00000478214 MDGA1Q8NFP4 955 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 SORCS1Q8WY21 1168 aa16.14■□□□□ 0.17
HMGA1-206ENST00000478214 PRMT1Q99873 361 aaKnown RBP16.14■□□□□ 0.17
HMGA1-206ENST00000478214 TPSD1Q9BZJ3 242 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms