RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 NME3Q13232 169 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 SPARCL1Q14515 664 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 PDK4Q16654 411 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 PARP6Q2NL67 630 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 ARL13BQ3SXY8 428 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 KBTBD12Q3ZCT8 623 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 CLLU1OSQ5K130 101 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 ARTNQ5T4W7 220 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 FAM72AQ5TYM5 149 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 FAM72DQ6L9T8 149 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 CGB2Q6NT52 195 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 LRRC8BQ6P9F7 803 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 SLC24A5Q71RS6 500 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 TAC4Q86UU9 113 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 TAX1BP1Q86VP1 789 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 FAM72BQ86X60 149 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 COLGALT2Q8IYK4 626 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 BANPQ8N9N5 519 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 COLGALT1Q8NBJ5 622 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 CD99L2Q8TCZ2 262 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 MGARPQ8TDB4 240 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 DQX1Q8TE96 717 aaKnown RBP10.12□□□□□ -0.79
USP39-214ENST00000474572 APBB2Q92870 758 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 GRAMD1AQ96CP6 724 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 HDAC11Q96DB2 347 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 P2RY11Q96G91 374 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 TMEM209Q96SK2 561 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 EBNA1BP2Q99848 306 aaKnown RBP10.12□□□□□ -0.79
USP39-214ENST00000474572 COLEC11Q9BWP8 271 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 SEZ6LQ9BYH1 1024 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 RHOBTB2Q9BYZ6 727 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 OSBPL2Q9H1P3 480 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 KDM4CQ9H3R0 1056 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 PRDM12Q9H4Q4 367 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 ELAC1Q9H777 363 aaKnown RBP10.12□□□□□ -0.79
USP39-214ENST00000474572 ACTR5Q9H9F9 607 aaPredicted RBP10.12□□□□□ -0.79
USP39-214ENST00000474572 TMEM51Q9NW97 253 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 MKS1Q9NXB0 559 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 ARHGEF38Q9NXL2 777 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 PRKAG3Q9UGI9 489 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 NOD1Q9Y239 953 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 PCDHA11Q9Y5I1 949 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 GOLGA6L7A0A1B0GV03 622 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 A0A1W2PQ45 241 aaPredicted RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 A0A1W2PQY0 241 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 CCT8L1PA6NM43 557 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 ANKRD65E5RJM6 399 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 RNF103O00237 685 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 TRIM66O15016 1216 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 AVILO75366 819 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 SPAG7O75391 227 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 ALDH1A2O94788 518 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 STK10O94804 968 aaKnown RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 DDHD2O94830 711 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 DHRS4L1P0CG22 281 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 ALADP13716 330 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 NEK3P51956 506 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 TPI1P60174 286 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 YWHAGP61981 247 aaKnown RBP eCLIP10.11□□□□□ -0.79
USP39-214ENST00000474572 SARNPP82979 210 aaKnown RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 TSPY1Q01534 308 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 ZNF33AQ06730 810 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 GALNT2Q10471 571 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 MTFR1Q15390 333 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 SLC1A5Q15758 541 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 PAN2Q504Q3 1202 aaKnown RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 NOMO2Q5JPE7 1267 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 BRMS1LQ5PSV4 323 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 MANEALQ5VSG8 457 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 BSPRYQ5W0U4 402 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 GLB1LQ6UWU2 654 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 UNC5AQ6ZN44 842 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 C4orf50Q6ZRC1 276 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 PAXIP1Q6ZW49 1069 aaPredicted RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 PDZD4Q76G19 769 aaPredicted RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 CTU1Q7Z7A3 348 aaKnown RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 PRPF39Q86UA1 669 aaKnown RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 SLC26A11Q86WA9 606 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 CCNJLQ8IV13 435 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 CNPY4Q8N129 248 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 C4orf33Q8N1A6 199 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 ZNF276Q8N554 614 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 OTUD6BQ8N6M0 293 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 ANKS4BQ8N8V4 417 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 GSDMBQ8TAX9 411 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 LRRN4Q8WUT4 740 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 CAPNS2Q96L46 248 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 TGS1Q96RS0 853 aaKnown RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 LGMNQ99538 433 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 ELAC2Q9BQ52 826 aaKnown RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 FERMT1Q9BQL6 677 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 FTHL17Q9BXU8 183 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 ZCWPW1Q9H0M4 648 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 SMYD2Q9NRG4 433 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 FGFR1OP2Q9NVK5 253 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 DDIT4Q9NX09 232 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 KANSL3Q9P2N6 904 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 ZC3H7BQ9UGR2 993 aaKnown RBP10.11□□□□□ -0.79
USP39-214ENST00000474572 GRID1Q9ULK0 1009 aa10.11□□□□□ -0.79
USP39-214ENST00000474572 PHF24Q9UPV7 400 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms