RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SNX30Q5VWJ9 437 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 LCLAT1Q6UWP7 414 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 FAM71AQ8IYT1 594 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 PDCD7Q8N8D1 485 aaKnown RBP12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 ANKRD52Q8NB46 1076 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 ZSWIM1Q9BR11 485 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 DUSP16Q9BY84 665 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 STK33Q9BYT3 514 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 RNF38Q9H0F5 515 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 HESX1Q9UBX0 185 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 ATMQ13315 3056 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 FAM92AA1XBS5 289 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 HHLA1C9JL84 531 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 F8VZ95 297 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 FOXN3O00409 490 aaPredicted RBP12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 SLC9A3R1O14745 358 aaPredicted RBP12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 CYP26A1O43174 497 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 MED7O43513 233 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 DKK1O94907 266 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 NFATC1O95644 943 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 ABL1P00519 1130 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 OAS1P00973 400 aaKnown RBP12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 CALCAP01258 141 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 PNMA6AP0CW24 399 aaPredicted RBP12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 SLC5A3P53794 718 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 JAM2P57087 298 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 SLC8A3P57103 927 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 ZXDBP98169 803 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 CFHR1Q03591 330 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 BST2Q10589 180 aaKnown RBP12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 CNGA2Q16280 664 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 PLEKHG6Q3KR16 790 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 PKDCCQ504Y2 493 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 DDX42Q86XP3 938 aaKnown RBP eCLIP12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 MARCH9Q86YJ5 346 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 SLC41A1Q8IVJ1 513 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 TTC16Q8NEE8 873 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 ZNF606Q8WXB4 792 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 FBXO32Q969P5 355 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 ANP32EQ9BTT0 268 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 CLMPQ9H6B4 373 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 ACP6Q9NPH0 428 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 NLRC4Q9NPP4 1024 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 IFNKQ9P0W0 207 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 CHORDC1Q9UHD1 332 aaPredicted RBP12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 KNTC1P50748 2209 aa12.47□□□□□ -0.41
SQSTM1-206ENST00000466342 A0A0A0MRY4 1105 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 TCRBV21S2A2A0A5A6 115 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 E9PAM4 449 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 M0QYV0 167 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 LEFTY2O00292 366 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 XPO1O14980 1071 aaKnown RBP12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 THAP12O43422 761 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 ZDHHC11BP0C7U3 371 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 SETSIPP0DME0 302 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 CLCN1P35523 988 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 PBX1P40424 430 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 TUBP50607 506 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 BPIFB4P59827 614 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 PTK2Q05397 1052 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 PDE4CQ08493 712 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 IFRD2Q12894 506 aaPredicted RBP12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 MEA1Q16626 185 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 GAB4Q2WGN9 574 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 HECTD3Q5T447 861 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 EMC10Q5UCC4 262 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 ADGRG2Q8IZP9 1017 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 SCAMP5Q8TAC9 235 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 SETD7Q8WTS6 366 aaKnown RBP12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 SPAG5Q96R06 1193 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 UBXN6Q9BZV1 441 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 ZDHHC5Q9C0B5 715 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 FBXO44Q9H4M3 255 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 TOR4AQ9NXH8 423 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 CPQQ9Y646 472 aa12.46□□□□□ -0.41
SQSTM1-206ENST00000466342 HECTD1Q9ULT8 2610 aa12.46□□□□□ -0.42
SQSTM1-206ENST00000466342 PTPRQQ9UMZ3 2332 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 COL6A6A6NMZ7 2263 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 TEX51A0A1B0GUA7 166 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 E2F8A0AVK6 867 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 ADAM23O75077 832 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 TPM3P06753 285 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 ATXN1LP0C7T5 689 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 CHRM1P11229 460 aaPredicted RBP12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 SOX5P35711 763 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 EIF2S3P41091 472 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 KIR2DL1P43626 348 aaPredicted RBP12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 PLA2G4AP47712 749 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 LRRC69Q6ZNQ3 347 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 GPRIN1Q7Z2K8 1008 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 PIGZQ86VD9 579 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 SLC47A2Q86VL8 602 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 GAS2L3Q86XJ1 694 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 RGL4Q8IZJ4 473 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 UBA3Q8TBC4 463 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 BAHD1Q8TBE0 780 aaPredicted RBP12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 OTUB2Q96DC9 234 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 HSPA12BQ96MM6 686 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 FCRL3Q96P31 734 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms