RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 LCMT1Q9UIC8 334 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 RNF8O76064 485 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 ENDOD1O94919 500 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 PDGFBP01127 241 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 PENKP01210 267 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 APODP05090 189 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 PSMA2P25787 234 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 TARSP26639 723 aaKnown RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 GALCP54803 685 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 RPL7AP62424 266 aaKnown RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 C15orf59Q2T9L4 293 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 FBXO43Q4G163 708 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 FAM133BQ5BKY9 247 aaKnown RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 TMEM196Q5HYL7 178 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 RABGAP1LQ5R372 815 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 TTC39BQ5VTQ0 682 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 OTUD1Q5VV17 481 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 CWF19L1Q69YN2 538 aaKnown RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 TXNDC11Q6PKC3 985 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 HJURPQ8NCD3 748 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 BHMTQ93088 406 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 IER2Q9BTL4 223 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 SLC2A11Q9BYW1 496 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 FOXQ1Q9C009 403 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 SPTLC3Q9NUV7 552 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 DNAJC17Q9NVM6 304 aaKnown RBP20.51■□□□□ 0.87
COL9A3-204ENST00000463487 ARHGEF38Q9NXL2 777 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 NENFQ9UMX5 172 aa20.51■□□□□ 0.87
COL9A3-204ENST00000463487 TMEM191CA6NGB0 347 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 TSPAN3O60637 253 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 CYP1A2P05177 515 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 TFE3P19532 575 aaPredicted RBP20.5■□□□□ 0.87
COL9A3-204ENST00000463487 OPRD1P41143 372 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 GALK1P51570 392 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 RAP1GAP2Q684P5 730 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 GRAMD4Q6IC98 578 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 BNIPLQ7Z465 357 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 FAM131BQ86XD5 332 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 DNAAF5Q86Y56 855 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 SYNPOQ8N3V7 929 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 NAT16Q8N8M0 369 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 CENPIQ92674 756 aaPredicted RBP20.5■□□□□ 0.87
COL9A3-204ENST00000463487 BAG1Q99933 345 aaPredicted RBP20.5■□□□□ 0.87
COL9A3-204ENST00000463487 C11orf16Q9NQ32 467 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 ARHGEF4Q9NR80 690 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 UVRAGQ9P2Y5 699 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 INTUQ9ULD6 942 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 F5P12259 2224 aa20.5■□□□□ 0.87
COL9A3-204ENST00000463487 CCP110O43303 1012 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 TULP3O75386 442 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 PAGE1O75459 146 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 TMEM253P0C7T8 217 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 TACR2P21452 398 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 GRIA2P42262 883 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 RPS9P46781 194 aaKnown RBP20.49■□□□□ 0.87
COL9A3-204ENST00000463487 DGKGP49619 791 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 MRE11P49959 708 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 AIF1P55008 147 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 ACAP1Q15027 740 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 E2F5Q15329 346 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 MS4A13Q5J8X5 152 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 PIK3R6Q5UE93 754 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 FYB2Q5VWT5 728 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 NADSYN1Q6IA69 706 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 RFWD3Q6PCD5 774 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 LRRC31Q6UY01 552 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 ETFBKMTQ8IXQ9 262 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 CCDC105Q8IYK2 499 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 LGI2Q8N0V4 545 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 CHFRQ96EP1 664 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 HAPLN3Q96S86 360 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 NUP85Q9BW27 656 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 PLK2Q9NYY3 685 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 CALCOCO1Q9P1Z2 691 aa20.49■□□□□ 0.87
COL9A3-204ENST00000463487 NRDCO43847 1150 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 FECHP22830 423 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 SLC6A4P31645 630 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 HDAC4P56524 1084 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 PIGHQ14442 188 aaPredicted RBP20.48■□□□□ 0.87
COL9A3-204ENST00000463487 GAB4Q2WGN9 574 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 SCYL2Q6P3W7 929 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 RHOT2Q8IXI1 618 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 C1orf74Q96LT6 269 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 RPRD1AQ96P16 312 aaPredicted RBP20.48■□□□□ 0.87
COL9A3-204ENST00000463487 ADAM33Q9BZ11 813 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 SIK2Q9H0K1 926 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 LMAN1LQ9HAT1 526 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 CTTNBP2NLQ9P2B4 639 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 IP6K2Q9UHH9 426 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 XPO7Q9UIA9 1087 aaKnown RBP20.48■□□□□ 0.87
COL9A3-204ENST00000463487 ANAPC7Q9UJX3 599 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 MIA3Q5JRA6 1907 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 COL4A3Q01955 1670 aa20.48■□□□□ 0.87
COL9A3-204ENST00000463487 GOLGA6L7A0A1B0GV03 622 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 TBC1D3BA6NDS4 549 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 SHISA7A6NL88 538 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 MYO1FO00160 1098 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 TBL1XO60907 577 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 KAT7O95251 611 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 HOXD9P28356 352 aaPredicted RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms