RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 UBA6A0AVT1 1052 aaPredicted RBP11.96□□□□□ -0.5
NPHP4-204ENST00000460696 C5orf60A6NFR6 353 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 ENTPD5O75356 428 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 CALB2P22676 271 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 IGFBP4P22692 258 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 GPD2P43304 727 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 KIF19Q2TAC6 998 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 STKLD1Q8NE28 680 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 PPHLN1Q8NEY8 458 aaKnown RBP11.96□□□□□ -0.5
NPHP4-204ENST00000460696 SENP8Q96LD8 212 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 VANGL2Q9ULK5 521 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 EFR3BQ9Y2G0 817 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 STYXL1Q9Y6J8 313 aa11.96□□□□□ -0.5
NPHP4-204ENST00000460696 C22orf31O95567 290 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 SMIM10L2AP0DMW4 78 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 SMIM10L2BP0DMW5 78 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 TCN1P20061 433 aaPredicted RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 ETFBP38117 255 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 OR1G1P47890 313 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 POU6F1Q14863 301 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 SIX1Q15475 284 aaPredicted RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 HABP4Q5JVS0 413 aaKnown RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 IQSEC1Q6DN90 963 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 UNC93AQ86WB7 457 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 SLC35B2Q8TB61 432 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 SCG3Q8WXD2 468 aaKnown RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 OXNAD1Q96HP4 312 aaPredicted RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 TRIM56Q9BRZ2 755 aaKnown RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 E9PBE3 544 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 TSPAN1O60635 241 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 KLHL41O60662 606 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 KLHL2O95198 593 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 ALADP13716 330 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 CPA3P15088 417 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 PTPN1P18031 435 aaKnown RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 GRM5P41594 1212 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 NR2C2P49116 596 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 PAPOLAP51003 745 aaKnown RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 MPP3Q13368 585 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 LACTB2Q53H82 288 aaPredicted RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 C15orf39Q6ZRI6 1047 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 ANKRD23Q86SG2 305 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 SPATA24Q86W54 205 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 MIB1Q86YT6 1006 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 B3GALNT2Q8NCR0 500 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 OR52K1Q8NGK4 314 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 NUF2Q9BZD4 464 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 DPEP3Q9H4B8 488 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 IL1RAPL1Q9NZN1 696 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 DCDC2Q9UHG0 476 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 LGALS13Q9UHV8 139 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 ZNF112Q9UJU3 913 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 SLC10A3P09131 477 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 PSEN2P49810 448 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 KLC1Q07866 573 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 MPP2Q14168 576 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 CTU1Q7Z7A3 348 aaKnown RBP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.95□□□□□ -0.5
NPHP4-204ENST00000460696 DCLRE1BQ9H816 532 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 CHST12Q9NRB3 414 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 RABGEF1Q9UJ41 708 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 NENFQ9UMX5 172 aa11.95□□□□□ -0.5
NPHP4-204ENST00000460696 C2CD4BA6NLJ0 364 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 MTSS1O43312 755 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 KLRC2P26717 231 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 ENPEPQ07075 957 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 CA9Q16790 459 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 TMEM63BQ5T3F8 832 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 CCNJLQ8IV13 435 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 C7orf61Q8IZ16 206 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 PYROXD2Q8N2H3 581 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 RFWD2Q8NHY2 731 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 PPTC7Q8NI37 304 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 CLEC4CQ8WTT0 213 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 FAM136AQ96C01 138 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 TMA16Q96EY4 203 aaKnown RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 ZFP42Q96MM3 310 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 EBNA1BP2Q99848 306 aaKnown RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 ZNF670Q9BS34 389 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 TSPYL2Q9H2G4 693 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 Q9H521 79 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SARS2Q9NP81 518 aaKnown RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 ARHGEF38Q9NXL2 777 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 A0A0A0MRY4 1105 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 BDNFP23560 247 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 CDK16Q00536 496 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 TCEAL1Q15170 157 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 PDCD2Q16342 344 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 FSCN1Q16658 493 aaKnown RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 UGP2Q16851 508 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 ANKS1BQ7Z6G8 1248 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SKA2Q8WVK7 121 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 NRCAMQ92823 1304 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SPATA13Q96N96 652 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 ATXN2Q99700 1313 aaKnown RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SDCBP2Q9H190 292 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SIX4Q9UIU6 781 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 C15orf41Q9Y2V0 281 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 CDY2AQ9Y6F7 541 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 CDY1Q9Y6F8 540 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms