RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 GOLGA6L7A0A1B0GV03 622 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 TYW5A2RUC4 315 aaKnown RBP16.73■□□□□ 0.27
COL7A1-203ENST00000459756 MAP3K13O43283 966 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 TBL1XO60907 577 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 HLA-FP30511 346 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 CDH5P33151 784 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-203ENST00000459756 SGSHP51688 502 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 CDK17Q00537 523 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 ARID5AQ03989 594 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 PTPN20Q4JDL3 420 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 ZC3H12AQ5D1E8 599 aaKnown RBP16.73■□□□□ 0.27
COL7A1-203ENST00000459756 PLA2G2CQ5R387 149 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 TMEM215Q68D42 235 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 OR6B2Q6IFH4 312 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 OLFML1Q6UWY5 402 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 FAM183BPQ6ZVS7 135 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 LPCAT2Q7L5N7 544 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 ERMP1Q7Z2K6 904 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 KIAA0907Q7Z7F0 614 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-203ENST00000459756 ZDHHC17Q8IUH5 632 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.73■□□□□ 0.27
COL7A1-203ENST00000459756 RLN3Q8WXF3 142 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 GANQ9H2C0 597 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 FAM204AQ9H8W3 233 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 VPS45Q9NRW7 570 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.73■□□□□ 0.27
COL7A1-203ENST00000459756 CALCOCO1Q9P1Z2 691 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 LIMA1Q9UHB6 759 aaKnown RBP16.73■□□□□ 0.27
COL7A1-203ENST00000459756 CDV3Q9UKY7 258 aaKnown RBP16.73■□□□□ 0.27
COL7A1-203ENST00000459756 RAD54BQ9Y620 910 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 DNAH14Q0VDD8 3507 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 ABCA7Q8IZY2 2146 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 THADAQ6YHU6 1953 aa16.73■□□□□ 0.27
COL7A1-203ENST00000459756 BCLAF3A2AJT9 711 aaKnown RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 WASH3PC4AMC7 463 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 ZNF217O75362 1048 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 LSM8O95777 96 aaKnown RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 MOCS2O96007 188 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 ERBB2P04626 1255 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 SLC2A3P11169 496 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 NDUFV2P19404 249 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 IL12RB1P42701 662 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 COPB1P53618 953 aaKnown RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 SLC6A3Q01959 620 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 CREB5Q02930 508 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 TYRO3Q06418 890 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 EIF4EBP2Q13542 120 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 ZNF234Q14588 700 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 MS4A13Q5J8X5 152 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 SPDYCQ5MJ68 293 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 SLC26A9Q7LBE3 791 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 DEFB106AQ8N104 65 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 AHI1Q8N157 1196 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 C12orf50Q8NA57 414 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 NETO1Q8TDF5 533 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 DDX1Q92499 740 aaKnown RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 BTN2A3PQ96KV6 586 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 MRGPRX1Q96LB2 322 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 NAT10Q9H0A0 1025 aaKnown RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 NUCKS1Q9H1E3 243 aaKnown RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 FAM207AQ9NSI2 230 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-203ENST00000459756 ABCB8Q9NUT2 735 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 TMEM63CQ9P1W3 806 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 SLC12A6Q9UHW9 1150 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 GGA2Q9UJY4 613 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 LAMA1P25391 3075 aa16.72■□□□□ 0.27
COL7A1-203ENST00000459756 LRRC10BA6NIK2 292 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 LGALS16A8MUM7 142 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 SYNCRIPO60506 623 aaKnown RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 PABPC1P11940 636 aaKnown RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 ZNF18P17022 549 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 CDK11BP21127 795 aaKnown RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 CCR1P32246 355 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 POLR2FP61218 127 aaKnown RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 PITX1P78337 314 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 CCDC6Q16204 474 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 TAF3Q5VWG9 929 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 SERPINA13PQ6UXR4 307 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 SLC36A4Q6YBV0 504 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 CHST9Q7L1S5 443 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 NOP9Q86U38 636 aaKnown RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 ADIPOR2Q86V24 386 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 MFN1Q8IWA4 741 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 CCDC117Q8IWD4 279 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 ZNF397Q8NF99 534 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 FIBINQ8TAL6 211 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 EPS8L1Q8TE68 723 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 SORCS1Q8WY21 1168 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 PRICKLE1Q96MT3 831 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 DDIT4Q9NX09 232 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 MBD1Q9UIS9 605 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-203ENST00000459756 PLA2G4CQ9UP65 541 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 SIK3Q9Y2K2 1263 aa16.71■□□□□ 0.27
COL7A1-203ENST00000459756 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-203ENST00000459756 KCNU1A8MYU2 1149 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 DAB1O75553 588 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 GRAP2O75791 330 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 CAVIN2O95810 425 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 ATP5BP06576 529 aaKnown RBP16.7■□□□□ 0.26
COL7A1-203ENST00000459756 NOS2P35228 1153 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms