RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 KCTD13Q8WZ19 329 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 EDEM1Q92611 657 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 P2RY11Q96G91 374 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 SGK2Q9HBY8 427 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 OSGEPQ9NPF4 335 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 CNGB3Q9NQW8 809 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 ABCB8Q9NUT2 735 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 SFMBT1Q9UHJ3 866 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 GGA2Q9UJY4 613 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 CLEC4EQ9ULY5 219 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 SCML1Q9UN30 329 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 CEP192Q8TEP8 1941 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 ASCC3Q8N3C0 2202 aaKnown RBP13.86□□□□□ -0.19
HMGB3-204ENST00000448905 TNRC6BQ9UPQ9 1833 aaKnown RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 AKAP13Q12802 2813 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 A0A1B0GVT2 93 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 TYW5A2RUC4 315 aaKnown RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 GOLGA6L4A6NEF3 574 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 SLC16A3O15427 465 aaKnown RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 CBFA2T3O75081 653 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 SMC2O95347 1197 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 PABPC1P11940 636 aaKnown RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 HOXD9P28356 352 aaPredicted RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 HLA-FP30511 346 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 ADIGQ0VDE8 80 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 CETN1Q12798 172 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 TTC31Q49AM3 519 aaPredicted RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 NUGGCQ68CJ6 796 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 TMEM215Q68D42 235 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 DBX2Q6ZNG2 339 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 ADAT2Q7Z6V5 191 aaKnown RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 SCML4Q8N228 414 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 GALNT15Q8N3T1 639 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 UBA3Q8TBC4 463 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 GANCQ8TET4 914 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 IRGQQ8WZA9 623 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 NDRG1Q92597 394 aaKnown RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 TMEM245Q9H330 911 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 IL21RQ9HBE5 538 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 ARMCX3Q9UH62 379 aaPredicted RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 HOOK1Q9UJC3 728 aaKnown RBP13.85□□□□□ -0.19
HMGB3-204ENST00000448905 COQ4Q9Y3A0 265 aa13.85□□□□□ -0.19
HMGB3-204ENST00000448905 YJEFN3A6XGL0 299 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 E7ENQ6 273 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 SEMA4FO95754 770 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 PAEPP09466 180 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 HLA-EP13747 358 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 LCP1P13796 627 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 CD27P26842 260 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 ACSL1P33121 698 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 STILQ15468 1287 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 INAVAQ3KP66 663 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 MBLAC2Q68D91 279 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 SLCO6A1Q86UG4 719 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 ADIPOR2Q86V24 386 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 CACUL1Q86Y37 369 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 RBBP8NLQ8NC74 664 aaPredicted RBP13.84□□□□□ -0.19
HMGB3-204ENST00000448905 CYB5D2Q8WUJ1 264 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 AZIN2Q96A70 460 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 GSDMAQ96QA5 445 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 METTL14Q9HCE5 456 aaKnown RBP13.84□□□□□ -0.19
HMGB3-204ENST00000448905 PRSS16Q9NQE7 514 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 ANKRD6Q9Y2G4 727 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.84□□□□□ -0.19
HMGB3-204ENST00000448905 ZZEF1O43149 2961 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 MYO18AQ92614 2054 aaKnown RBP13.84□□□□□ -0.19
HMGB3-204ENST00000448905 SPEGQ15772 3267 aa13.84□□□□□ -0.19
HMGB3-204ENST00000448905 CEP295Q9C0D2 2601 aa13.83□□□□□ -0.19
HMGB3-204ENST00000448905 TAF4O00268 1085 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 TULP2O00295 520 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 TNFSF14O43557 240 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 TBL1XO60907 577 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 FSBPO95073 299 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 PI4KAP42356 2102 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 PRCPP42785 496 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 GRK6P43250 576 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 GRIA4P48058 902 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 C21orf59P57076 290 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 RPS14P62263 151 aaKnown RBP13.83□□□□□ -0.2
HMGB3-204ENST00000448905 STIM1Q13586 685 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 CNGA2Q16280 664 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 KIF19Q2TAC6 998 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 CBWD6Q4V339 395 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 CBWD3Q5JTY5 395 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 CBWD5Q5RIA9 395 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 ZNF658Q5TYW1 1059 aaPredicted RBP13.83□□□□□ -0.2
HMGB3-204ENST00000448905 ZNF776Q68DI1 518 aaPredicted RBP13.83□□□□□ -0.2
HMGB3-204ENST00000448905 LCLAT1Q6UWP7 414 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 TMPRSS7Q7RTY8 843 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 KIAA0907Q7Z7F0 614 aaPredicted RBP13.83□□□□□ -0.2
HMGB3-204ENST00000448905 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.83□□□□□ -0.2
HMGB3-204ENST00000448905 C1orf216Q8TAB5 229 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 IGSF8Q969P0 613 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 C6orf106Q9H6K1 298 aaPredicted RBP13.83□□□□□ -0.2
HMGB3-204ENST00000448905 TM9SF3Q9HD45 589 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 FNDC3AQ9Y2H6 1198 aaKnown RBP13.83□□□□□ -0.2
HMGB3-204ENST00000448905 SNX11Q9Y5W9 270 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 GON4LQ3T8J9 2241 aa13.83□□□□□ -0.2
HMGB3-204ENST00000448905 ASPMQ8IZT6 3477 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 GOLGA8CPA6NN73 597 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms