RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 CICQ96RK0 1608 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-205ENST00000439160 TCRBV7S2A1N4TA0A589 114 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 TCN1P20061 433 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-205ENST00000439160 FAAP100Q0VG06 881 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 SLC45A4Q5BKX6 768 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 LRRC43Q8N309 656 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 TRIM15Q9C019 465 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 CIPCQ9C0C6 399 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 UBE2OQ9C0C9 1292 aaKnown RBP12.62□□□□□ -0.39
TCOF1-205ENST00000439160 SCUBE2Q9NQ36 999 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 ABCC13Q9NSE7 274 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 SLC27A5Q9Y2P5 690 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 ADGRA3Q8IWK6 1321 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 CILPO75339 1184 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 BANF1O75531 89 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 ABCG1P45844 678 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 AARSP49588 968 aaKnown RBP eCLIP12.62□□□□□ -0.392e-6■■■□□ 15.7
TCOF1-205ENST00000439160 CSHL1Q14406 222 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 LRRC36Q1X8D7 754 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 KBTBD12Q3ZCT8 623 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 TTMPQ5BVD1 217 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 SH3D19Q5HYK7 790 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 LAYNQ6UX15 382 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 AGGF1Q8N302 714 aaeCLIP12.62□□□□□ -0.398e-7■□□□□ 10.4
TCOF1-205ENST00000439160 LGMNQ99538 433 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 HAUS8Q9BT25 410 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 ETNK2Q9NVF9 386 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 TRMT6Q9UJA5 497 aaKnown RBP12.62□□□□□ -0.39
TCOF1-205ENST00000439160 CDYLQ9Y232 598 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 NCF1BA6NI72 391 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 NCF1CA8MVU1 366 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 KLHL2O95198 593 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 NCF1P14598 390 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 CHKAP35790 457 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 POLE2P56282 527 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 PGM2Q96G03 612 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 UBXN6Q9BZV1 441 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 SPATS2LQ9NUQ6 558 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 R3HDM2Q9Y2K5 976 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 ZMYM2Q9UBW7 1377 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 PSMB4P28070 264 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 TUFMP49411 452 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 KPNA1P52294 538 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 PLEKHA7Q6IQ23 1121 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 POLNQ7Z5Q5 900 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 RFWD2Q8NHY2 731 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 GPR152Q8TDT2 470 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 TFAP2BQ92481 460 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 NDRG1Q92597 394 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 CCDC138Q96M89 665 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 GPAMQ9HCL2 828 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 PADI3Q9ULW8 664 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 ALS2Q96Q42 1657 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 RALBP11234 206 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 IKBKEQ14164 716 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 TBCCQ15814 346 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 DDR2Q16832 855 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 SLC10A6Q3KNW5 377 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 TMEM259Q4ZIN3 620 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 FAM35AQ86V20 835 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 LZTR1Q8N653 840 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 ALLCQ8N6M5 410 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 MRPL1Q9BYD6 325 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 YIPF3Q9GZM5 350 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 DRG1Q9Y295 367 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 GIT1Q9Y2X7 761 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 DUSP11O75319 330 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 C22orf31O95567 290 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 CPA3P15088 417 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 GP5P40197 560 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 MATKP42679 507 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 AQP5P55064 265 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 FSTL1Q12841 308 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 TMCO4Q5TGY1 634 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 NUP93Q8N1F7 819 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 EIF1ADQ8N9N8 165 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 LPCAT1Q8NF37 534 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 MRPL40Q9NQ50 206 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 UTP6Q9NYH9 597 aaKnown RBP12.61□□□□□ -0.39
TCOF1-205ENST00000439160 TRHDEQ9UKU6 1024 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 DNAJC16Q9Y2G8 782 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 RPTORQ8N122 1335 aa12.61□□□□□ -0.39
TCOF1-205ENST00000439160 TMEM88BA6NKF7 163 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 DDX3YO15523 660 aaKnown RBP12.6□□□□□ -0.39
TCOF1-205ENST00000439160 HNRNPCL1O60812 293 aaKnown RBP12.6□□□□□ -0.39
TCOF1-205ENST00000439160 RTN3O95197 1032 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-205ENST00000439160 ERCC2P18074 760 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 KLRC2P26717 231 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 RPL9P32969 192 aaKnown RBP12.6□□□□□ -0.39
TCOF1-205ENST00000439160 MRPS5P82675 430 aaKnown RBP12.6□□□□□ -0.39
TCOF1-205ENST00000439160 PLD1Q13393 1074 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 KCNA10Q16322 511 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 LCLAT1Q6UWP7 414 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 TMEM192Q8IY95 271 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 CMTM5Q96DZ9 223 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 DEFB118Q96PH6 123 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 HAO1Q9UJM8 370 aa12.6□□□□□ -0.39
TCOF1-205ENST00000439160 NOCTQ9UK39 431 aaKnown RBP12.6□□□□□ -0.39
TCOF1-205ENST00000439160 AURKCQ9UQB9 309 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms